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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:813.6 nTPM
HPA Brain:317.4 nTPM
GTEx:813.6 nTPM
FANTOM5:709.3 Scaled Tags Per Million
Pig:173.7 nTPM
Mouse:319.6 nTPM
Allen mouse:18.6 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

317.4
Sample id Sample description nTPM
Amygdala
nTPM: 317.4
2514 Male, age 75, right hemisphere 383.4
1987 Female, age 91, left hemisphere 346.6
2814 Male, age 76, right hemisphere 308.6
2517 Female, age 94, left hemisphere 290.4
2695 Female, age 67, right hemisphere 258.0
Basal amygdala
nTPM: 263.8
2609 Male, age 75, right hemisphere 315.0
2243 Female, age 91, right hemisphere 305.9
1955 Male, age 76, both hemispheres 281.6
2110 Male, age 80, left hemisphere 279.0
2685 Female, age 94, left hemisphere 253.1
2827 Female, age 67, right hemisphere 148.2
Central amygdala
nTPM: 261.9
2239 Male, age 80, left hemisphere 298.6
2515 Male, age 75, right hemisphere 268.2
1905 Male, age 76, both hemispheres 264.7
2701 Female, age 91, right hemisphere 245.8
2826 Female, age 94, left hemisphere 232.2
Corticomedial amygdala
nTPM: 311.7
2829 Male, age 80, left hemisphere 402.0
2242 Female, age 91, right hemisphere 361.2
2428 Male, age 75, right hemisphere 345.7
2429 Female, age 94, left hemisphere 304.9
2240 Male, age 76, both hemispheres 282.2
2535 Female, age 67, right hemisphere 174.0
Lateral amygdala
nTPM: 242.3
2516 Male, age 75, right hemisphere 324.5
1883 Male, age 76, both hemispheres 315.9
2534 Female, age 94, left hemisphere 238.1
2255 Female, age 91, right hemisphere 212.0
2256 Male, age 80, left hemisphere 204.6
2830 Female, age 67, right hemisphere 158.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

813.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 813.6
Samples: 152

Max nTPM: 2835.8
Min nTPM: 346.4
Std nTPM: 352.8
Median nTPM: 742.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2835.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2054.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1995.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1964.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1802.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1718.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1454.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1453.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1447.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1392.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1374.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1293.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1265.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1261.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1236.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1216.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1199.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1175.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1169.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1122.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1121.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1070.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1068.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1063.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1063.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1020.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1017.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1002.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 994.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 993.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 985.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 982.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 977.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 976.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 941.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 936.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 922.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 904.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 904.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 899.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 886.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 883.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 883.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 869.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 864.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 858.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 839.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 827.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 826.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 820.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 817.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 806.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 805.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 798.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 796.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 795.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 793.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 792.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 784.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 780.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 776.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 774.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 773.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 770.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 768.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 764.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 763.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 762.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 762.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 758.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 758.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 757.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 756.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 753.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 750.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 743.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 742.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 741.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 726.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 723.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 719.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 710.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 706.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 702.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 697.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 690.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 687.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 686.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 686.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 686.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 685.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 684.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 677.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 677.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 676.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 670.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 669.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 667.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 667.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 667.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 666.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 665.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 654.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 654.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 648.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 647.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 643.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 639.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 637.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 636.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 622.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 619.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 617.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 609.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 606.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 597.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 589.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 581.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 569.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 563.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 560.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 560.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 559.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 554.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 552.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 547.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 536.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 535.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 524.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 521.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 517.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 515.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 514.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 511.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 504.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 496.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 489.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 489.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 482.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 472.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 461.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 457.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 455.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 455.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 454.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 450.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 434.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 422.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 420.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 376.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 362.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 346.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

709.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 709.3
FF:10151-102I7 76 years, female 709.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.7
Pig sample Sample description nTPM
Amygdala
nTPM: 173.7
Samples: 4

Max nTPM: 252.2
Min nTPM: 122.4
Sample A Female 252.2
Sample B Female 127.6
Sample C Male 122.4
Sample D Male 192.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

319.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 319.7
Samples: 4

Max nTPM: 344.8
Min nTPM: 299.0
Sample A Male 320.3
Sample B Male 344.8
Sample C Female 299.0
Sample D Female 314.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.6
81600140 Antisense, RP_080312_03_A05, Mouse strain C57BL/6J (56 days, male) 19.8
69627021 Antisense, RP_050428_01_G02, Mouse strain C57BL/6J (56 days, male) 17.4

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