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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:169.3 nTPM
HPA Brain:315.7 nTPM
GTEx:169.3 nTPM
FANTOM5:220.4 Scaled Tags Per Million
Pig:146.5 nTPM
Mouse:120.7 nTPM
Allen mouse:3.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

315.7
Sample id Sample description nTPM
Amygdala
nTPM: 315.7
2814 Male, age 76, right hemisphere 506.8
2514 Male, age 75, right hemisphere 333.9
2695 Female, age 67, right hemisphere 284.8
2517 Female, age 94, left hemisphere 228.4
1987 Female, age 91, left hemisphere 224.7
Basal amygdala
nTPM: 180.0
1955 Male, age 76, both hemispheres 244.7
2110 Male, age 80, left hemisphere 216.5
2827 Female, age 67, right hemisphere 197.3
2685 Female, age 94, left hemisphere 181.6
2609 Male, age 75, right hemisphere 152.6
2243 Female, age 91, right hemisphere 87.2
Central amygdala
nTPM: 235.3
1905 Male, age 76, both hemispheres 465.8
2515 Male, age 75, right hemisphere 208.8
2239 Male, age 80, left hemisphere 205.3
2701 Female, age 91, right hemisphere 181.4
2826 Female, age 94, left hemisphere 115.3
Corticomedial amygdala
nTPM: 136.2
2428 Male, age 75, right hemisphere 187.2
2429 Female, age 94, left hemisphere 186.9
2240 Male, age 76, both hemispheres 153.3
2535 Female, age 67, right hemisphere 130.8
2829 Male, age 80, left hemisphere 103.1
2242 Female, age 91, right hemisphere 55.9
Lateral amygdala
nTPM: 284.7
1883 Male, age 76, both hemispheres 523.6
2516 Male, age 75, right hemisphere 291.9
2830 Female, age 67, right hemisphere 284.2
2256 Male, age 80, left hemisphere 224.9
2534 Female, age 94, left hemisphere 196.0
2255 Female, age 91, right hemisphere 187.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 169.3
Samples: 152

Max nTPM: 847.3
Min nTPM: 10.8
Std nTPM: 131.1
Median nTPM: 128.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 847.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 759.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 677.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 513.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 503.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 494.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 486.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 445.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 387.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 376.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 375.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 357.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 338.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 309.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 307.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 293.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 289.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 287.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 281.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 276.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 273.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 267.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 258.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 256.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 249.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 246.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 240.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 235.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 231.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 228.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 226.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 226.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 225.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 224.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 221.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 221.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 218.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 213.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 212.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 211.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 211.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 211.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 210.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 209.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 201.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 195.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 194.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 192.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 191.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 184.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 183.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 181.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 176.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 174.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 170.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 169.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 168.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 164.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 162.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 160.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 159.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 158.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 158.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 158.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 157.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 157.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 156.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 156.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 145.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 144.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 144.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 142.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 139.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 137.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 137.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 128.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 127.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 127.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 126.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 126.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 125.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 123.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 122.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 122.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 121.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 120.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 119.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 119.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 117.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 117.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 114.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 113.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 113.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 113.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 111.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 107.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 105.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 103.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 102.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 101.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 99.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 97.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 96.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 96.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 96.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 94.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 92.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 92.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 91.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 87.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 86.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 85.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 85.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 84.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 84.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 84.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 84.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 83.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 81.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 81.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 80.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 78.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 78.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 76.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 74.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 73.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 72.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 72.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 67.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 65.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 65.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 62.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 62.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 58.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 57.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 56.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 56.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 55.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 55.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 52.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 48.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 44.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 43.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 41.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 41.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 40.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 39.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 37.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 36.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 34.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 23.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 10.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

220.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 220.4
FF:10151-102I7 76 years, female 220.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.5
Pig sample Sample description nTPM
Amygdala
nTPM: 146.5
Samples: 4

Max nTPM: 251.9
Min nTPM: 78.7
Sample A Female 99.6
Sample B Female 251.9
Sample C Male 155.7
Sample D Male 78.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 120.7
Samples: 4

Max nTPM: 180.7
Min nTPM: 93.4
Sample A Male 105.1
Sample B Male 93.4
Sample C Female 180.7
Sample D Female 103.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.8
68795444 Antisense, RP_041130_01_F08, Mouse strain C57BL/6J (56 days, male) 3.8

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