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MYL6
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1812.9 nTPM
HPA:1154.5 nTPM
GTEx:1812.9 nTPM
FANTOM5:413.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA046859Antibody HPA063034
Glandular cells Not detectedLow

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1154.5
overview
Male, age 65
Small intestine sample 232
nTPM: 909.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1276.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1192.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1240.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1812.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1812.9
Samples: 187

Max nTPM: 7065.9
Min nTPM: 718.5
Std nTPM: 1218.7
Median nTPM: 1378.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 7065.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 5476.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 5400.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 5399.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 5274.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 5074.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 4954.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 4932.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 4785.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 4759.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 4715.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 4704.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 4621.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 4592.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 4444.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 4166.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 4078.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 4055.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 3983.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 3862.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 3849.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 3710.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 3678.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 3638.3
GTEX-1192X-2526-SM-59868 50-59 years, male 3375.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 3294.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 3099.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 2958.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2865.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2845.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 2741.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2623.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 2580.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 2473.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2391.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2370.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2341.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2215.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 2145.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 2132.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2101.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2053.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1964.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1958.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1939.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1895.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1839.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1781.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1764.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1751.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1727.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1724.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1720.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1716.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1715.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1676.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1656.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1647.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1640.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1630.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1625.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1610.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1609.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1606.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1601.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1588.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1574.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1566.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1544.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1539.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1519.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1509.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1503.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1472.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1471.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1470.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1469.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1458.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1453.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1452.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1447.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1447.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1446.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1432.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1432.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1432.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1406.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1403.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1403.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1400.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1394.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1384.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1381.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1378.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1366.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1352.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1347.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1342.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1336.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1309.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1289.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1288.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1285.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1278.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1278.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1277.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1269.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1269.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1251.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1250.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1236.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1230.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1218.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1212.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1212.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1205.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1199.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1198.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1193.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1191.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1182.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1170.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1168.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1166.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1159.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1149.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1148.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1146.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1146.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1143.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1142.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1138.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1137.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1116.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1112.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1098.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1098.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1097.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1089.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1080.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1073.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1067.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 1066.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1060.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1057.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1055.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1052.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1049.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1043.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1041.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1039.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1031.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1030.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1030.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1008.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1005.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1005.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1002.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 987.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 987.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 967.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 960.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 959.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 946.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 942.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 929.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 907.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 903.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 894.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 891.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 859.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 846.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 844.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 826.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 819.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 792.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 791.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 790.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 778.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 777.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 777.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 770.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 759.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 755.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 753.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 737.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 718.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

413.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 413.1
FF:10024-101D6 15,40,85 years, mixed 413.1

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