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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:778.5 nTPM
HPA Brain:349.0 nTPM
GTEx:778.5 nTPM
FANTOM5:273.8 Scaled Tags Per Million
Pig:547.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

349.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 295.6
1981 Female, age 72, midline 354.5
2194 Female, age 79, both hemispheres 305.9
2048 Male, age 55, midline 284.3
2816 Male, age 47, midline 281.7
2565 Male, age 75, midline 251.5
Cervical spinal cord, dorsal horn
nTPM: 298.2
2173 Female, age 72, unknown 381.7
2069 Male, age 47, both hemispheres 328.6
2296 Male, age 66, both hemispheres 310.7
1877 Male, age 55, unknown 289.8
2721 Male, age 90, both hemispheres 243.3
2297 Male, age 75, both hemispheres 235.2
Cervical spinal cord, ventral horn
nTPM: 349.0
2098 Female, age 72, unknown 441.9
2809 Male, age 90, both hemispheres 428.1
2480 Male, age 75, both hemispheres 336.3
2295 Male, age 66, both hemispheres 321.3
2068 Male, age 55, unknown 301.6
2820 Female, age 79, both hemispheres 264.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

778.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 778.5
Samples: 159

Max nTPM: 1821.5
Min nTPM: 349.3
Std nTPM: 194.0
Median nTPM: 745.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1821.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1389.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1272.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1257.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1236.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1229.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1175.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1172.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1146.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1109.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1106.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1081.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1059.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1047.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1027.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1010.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1009.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1008.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1004.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1001.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 972.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 972.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 960.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 952.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 946.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 940.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 939.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 928.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 927.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 918.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 890.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 883.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 878.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 875.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 873.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 869.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 866.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 858.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 853.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 853.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 852.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 851.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 848.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 848.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 845.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 844.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 844.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 841.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 833.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 832.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 820.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 819.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 810.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 808.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 799.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 795.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 793.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 789.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 789.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 787.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 786.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 783.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 780.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 779.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 779.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 779.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 777.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 775.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 764.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 760.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 760.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 757.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 757.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 749.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 749.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 748.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 748.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 747.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 746.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 745.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 743.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 742.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 741.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 741.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 738.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 737.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 736.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 735.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 733.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 731.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 729.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 725.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 722.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 721.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 718.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 717.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 715.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 712.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 712.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 710.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 709.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 708.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 702.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 700.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 696.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 693.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 689.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 688.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 686.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 684.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 684.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 680.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 676.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 674.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 669.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 667.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 666.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 665.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 660.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 658.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 657.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 654.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 649.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 643.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 635.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 634.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 622.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 619.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 618.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 616.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 612.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 612.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 610.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 609.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 608.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 607.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 604.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 603.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 600.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 598.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 591.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 588.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 588.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 586.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 569.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 568.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 568.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 561.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 557.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 547.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 546.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 526.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 515.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 490.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 489.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 486.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 474.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 462.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 349.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

273.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 273.8
FF:10181-103D1 60 years, female 383.8
FF:10159-103A6 76 years, female 163.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

547.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 547.0
Samples: 4

Max nTPM: 770.6
Min nTPM: 407.6
Sample A Female 407.6
Sample B Female 538.3
Sample C Male 770.6
Sample D Male 471.6
Ventral spinal cord
nTPM: 483.7
Samples: 4

Max nTPM: 541.8
Min nTPM: 353.6
Sample A Female 353.6
Sample B Female 505.0
Sample C Male 541.8
Sample D Male 534.3

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