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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1631.0 nTPM
GTEx:1631.0 nTPM
FANTOM5:865.7 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA046859Antibody HPA063034
Squamous epithelial cells Not detectedLow




VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1631.0
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1631.0
Samples: 156

Max nTPM: 4058.4
Min nTPM: 746.3
Std nTPM: 709.9
Median nTPM: 1425.6
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 4058.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 4054.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4021.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 3772.2
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 3760.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 3533.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 3521.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 3503.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 3275.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 3252.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 3202.1
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2683.0
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 2644.6
GTEX-QCQG-1226-SM-48U23 50-59 years, female 2595.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 2585.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 2534.4
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 2526.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2506.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2408.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 2404.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2330.4
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2299.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2298.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2268.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 2230.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2187.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 2136.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 2130.9
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2128.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2093.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2090.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 2051.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 2049.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2048.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2037.4
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1993.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1948.7
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1910.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1904.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1864.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1858.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1857.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1842.4
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1803.7
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1795.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1795.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1754.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1741.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1734.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1665.2
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 1651.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1635.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1632.9
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1620.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1617.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1593.0
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1562.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1558.9
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1557.1
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1554.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1548.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1529.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1522.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1522.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1508.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1497.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1496.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1494.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1491.0
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1476.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1473.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1461.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1457.0
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1450.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1448.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1439.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1437.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1434.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1417.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1414.9
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1402.3
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1399.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1399.2
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1386.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1386.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1385.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1359.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1332.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1326.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1308.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1301.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1287.3
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1270.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1267.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1255.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1253.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1250.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1247.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1242.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1242.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1242.0
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1212.0
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1203.1
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1202.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1201.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1200.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1199.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1195.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1194.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 1194.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1182.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1176.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 1175.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1172.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1163.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1160.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1148.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 1140.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1138.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1135.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1134.1
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1131.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1125.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1124.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1119.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1114.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1074.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1074.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1064.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1062.7
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1060.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1055.9
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1053.9
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1052.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1050.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1045.0
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1041.8
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1040.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1040.7
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1036.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1030.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1023.7
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1016.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1006.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 994.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 985.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 956.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 949.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 946.7
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 917.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 911.4
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 874.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 851.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 799.4
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 792.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 746.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

865.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 865.7
FF:10204-103F6 68 years, female 865.7

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