We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
COMT
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • COMT
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:115.1 nTPM
HPA Brain:99.5 nTPM
GTEx:115.1 nTPM
FANTOM5:75.3 Scaled Tags Per Million
Pig:86.7 nTPM
Mouse:99.4 nTPM
Allen mouse:6.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.5
Sample id Sample description nTPM
Amygdala
nTPM: 99.5
1987 Female, age 91, left hemisphere 108.0
2514 Male, age 75, right hemisphere 105.5
2517 Female, age 94, left hemisphere 96.1
2814 Male, age 76, right hemisphere 95.3
2695 Female, age 67, right hemisphere 92.6
Basal amygdala
nTPM: 78.2
2609 Male, age 75, right hemisphere 96.9
1955 Male, age 76, both hemispheres 84.8
2110 Male, age 80, left hemisphere 83.9
2243 Female, age 91, right hemisphere 73.8
2685 Female, age 94, left hemisphere 71.6
2827 Female, age 67, right hemisphere 57.9
Central amygdala
nTPM: 86.8
2515 Male, age 75, right hemisphere 106.8
2826 Female, age 94, left hemisphere 89.0
1905 Male, age 76, both hemispheres 88.7
2239 Male, age 80, left hemisphere 78.8
2701 Female, age 91, right hemisphere 70.7
Corticomedial amygdala
nTPM: 76.2
2428 Male, age 75, right hemisphere 98.7
2242 Female, age 91, right hemisphere 82.6
2240 Male, age 76, both hemispheres 73.2
2429 Female, age 94, left hemisphere 71.7
2829 Male, age 80, left hemisphere 65.9
2535 Female, age 67, right hemisphere 65.0
Lateral amygdala
nTPM: 83.7
2516 Male, age 75, right hemisphere 97.9
2256 Male, age 80, left hemisphere 88.1
2534 Female, age 94, left hemisphere 85.4
1883 Male, age 76, both hemispheres 83.4
2255 Female, age 91, right hemisphere 80.2
2830 Female, age 67, right hemisphere 67.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 115.1
Samples: 152

Max nTPM: 221.1
Min nTPM: 48.5
Std nTPM: 32.2
Median nTPM: 109.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 221.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 219.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 207.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 197.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 191.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 182.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 180.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 178.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 175.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 169.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 165.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 165.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 164.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 164.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 162.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 162.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 160.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 159.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 156.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 155.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 153.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 152.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 151.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 150.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 148.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 146.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 144.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 143.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 141.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 140.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 139.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 138.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 137.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 136.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 135.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 134.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 133.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 130.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 129.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 129.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 127.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 127.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 127.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 127.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 126.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 124.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 124.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 124.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 123.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 121.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 121.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 120.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 118.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 118.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 117.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 117.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 116.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 116.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 116.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 116.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 115.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 114.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 114.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 114.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 114.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 114.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 113.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 113.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 113.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 113.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 112.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 112.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 111.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 110.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 110.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 110.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 109.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 108.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 108.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 106.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 105.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 105.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 105.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 105.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 104.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 104.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 104.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 102.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 102.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 102.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 102.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 101.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 100.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 100.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 100.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 100.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 99.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 99.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 99.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 99.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 99.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 99.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 97.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 97.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 97.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 97.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 97.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 97.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 96.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 95.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 95.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 95.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 94.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 94.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 93.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 93.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 92.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 92.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 91.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 91.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 91.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 91.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 90.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 90.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 88.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 87.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 87.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 86.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 85.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 85.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 84.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 83.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 83.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 82.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 82.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 82.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 82.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 81.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 80.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 78.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 76.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 74.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 73.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 70.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 70.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 69.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 69.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 69.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 65.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 59.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 55.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 48.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

75.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 75.3
FF:10151-102I7 76 years, female 75.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.7
Pig sample Sample description nTPM
Amygdala
nTPM: 86.7
Samples: 4

Max nTPM: 99.8
Min nTPM: 77.2
Sample A Female 99.8
Sample B Female 78.3
Sample C Male 91.5
Sample D Male 77.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 99.4
Samples: 4

Max nTPM: 104.8
Min nTPM: 95.3
Sample A Male 95.3
Sample B Male 99.3
Sample C Female 104.8
Sample D Female 98.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.0
68301371 Antisense, RP_041130_01_B06, Mouse strain C57BL/6J (56 days, male) 6.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org