MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:117.0 nTPM
HPA Brain:118.8 nTPM
GTEx:117.0 nTPM
FANTOM5:103.3 Scaled Tags Per Million
Pig:131.2 nTPM
Mouse:72.1 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 118.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.9
2828 Female, age 72, unknown 109.8
1870 Female, age 42, unknown 108.0
2411 Female, age 72, unknown 102.4
1833 Male, age 53, unknown 96.7
1830 Male, age 51, unknown 93.2
2019 Male, age 18, unknown 92.8
2586 Male, age 75, left hemisphere 83.4
1827 Male, age 72, unknown 83.0
2666 Male, age 74, left hemisphere 80.3
2219 Male, age 76, both hemispheres 69.8
Dorsal raphe nucleus
nTPM: 104.4
2016 Female, age 72, unknown 119.9
2298 Female, age 72, unknown 113.1
2750 Male, age 76, both hemispheres 104.6
1828 Male, age 53, unknown 94.6
2047 Male, age 72, unknown 89.9
Inferior colliculus
nTPM: 86.3
1848 Female, age 42, unknown 96.1
2849 Male, age 72, unknown 84.0
2097 Female, age 72, unknown 83.0
1890 Male, age 53, unknown 82.2
Median raphe nucleus
nTPM: 94.1
2220 Male, age 76, midline 94.1
Periaquaductal grey, anterior
nTPM: 94.5
1795 Male, age 51, unknown 101.6
2502 Female, age 75, unknown 94.1
1947 Male, age 18, unknown 87.9
Periaquaductal grey, dorsal
nTPM: 103.7
2850 Male, age 76, both hemispheres 137.1
1831 Male, age 72, unknown 100.4
1840 Male, age 53, unknown 89.2
2464 Female, age 72, unknown 88.0
Periaquaductal grey, lateral
nTPM: 118.8
2140 Male, age 76, both hemispheres 136.1
2272 Male, age 74, both hemispheres 118.3
2053 Male, age 18, unknown 102.0
Pretectal area
nTPM: 95.2
2273 Male, age 74, both hemispheres 132.0
2224 Female, age 72, unknown 104.9
2667 Female, age 75, unknown 103.5
1815 Male, age 53, unknown 98.1
2316 Male, age 76, right hemisphere 96.9
2407 Male, age 75, both hemispheres 94.4
1817 Female, age 42, unknown 89.7
2825 Male, age 18, unknown 89.6
1944 Female, age 72, unknown 85.2
2007 Male, age 72, unknown 81.0
1816 Male, age 51, unknown 71.4
Red nucleus
nTPM: 107.4
2769 Male, age 72, unknown 129.4
1904 Male, age 53, unknown 128.9
1865 Male, age 51, unknown 122.1
2227 Male, age 72, unknown 119.6
2503 Female, age 72, unknown 118.1
1954 Female, age 42, unknown 113.0
2785 Male, age 18, unknown 112.6
2823 Male, age 76, right hemisphere 98.5
1821 Female, age 72, unknown 97.9
2725 Female, age 75, unknown 96.5
2588 Male, age 74, left hemisphere 88.8
2584 Male, age 75, left hemisphere 63.5
Substantia nigra
nTPM: 80.7
2699 Male, age 18, unknown 103.5
1851 Male, age 51, unknown 93.7
1916 Female, age 42, unknown 87.8
2590 Female, age 75, unknown 83.1
1889 Female, age 72, unknown 80.4
2583 Male, age 75, right hemisphere 79.4
1941 Male, age 53, unknown 75.3
2409 Female, age 72, unknown 70.7
2665 Male, age 74, both hemispheres 69.4
2241 Male, age 72, unknown 63.5
Superior colliculus
nTPM: 96.7
1995 Male, age 72, unknown 132.5
1913 Female, age 42, unknown 116.0
1796 Male, age 53, unknown 101.6
2587 Male, age 74, left hemisphere 98.1
2668 Female, age 75, unknown 91.6
1839 Male, age 51, unknown 90.5
2261 Male, age 18, unknown 88.6
2664 Male, age 75, both hemispheres 88.6
2087 Female, age 72, unknown 86.6
1895 Male, age 76, right hemisphere 73.4
Ventral tegmental area
nTPM: 97.6
2223 Female, age 72, unknown 114.2
2410 Female, age 72, unknown 101.0
2021 Male, age 53, unknown 94.6
2218 Male, age 76, both hemispheres 93.6
1915 Female, age 42, unknown 91.8
1942 Male, age 51, unknown 90.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 117.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 117.0
Samples: 139

Max nTPM: 237.5
Min nTPM: 50.4
Std nTPM: 33.0
Median nTPM: 111.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 237.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 218.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 211.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 197.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 197.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 186.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 184.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 181.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 180.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 178.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 166.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 103.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.3
FF:10158-103A5 76 years, female 103.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 131.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 126.0
Samples: 4

Max nTPM: 137.4
Min nTPM: 107.1
Sample A Female 137.4
Sample B Female 107.1
Sample C Male 132.2
Sample D Male 127.2
Midbrain
nTPM: 129.2
Samples: 4

Max nTPM: 160.1
Min nTPM: 104.0
Sample A Female 160.1
Sample B Female 126.9
Sample C Male 125.6
Sample D Male 104.0
Periaqueductal gray
nTPM: 113.4
Samples: 3

Max nTPM: 128.6
Min nTPM: 96.6
Sample B Female 114.9
Sample C Male 128.6
Sample D Male 96.6
Superior colliculi
nTPM: 131.2
Samples: 4

Max nTPM: 147.8
Min nTPM: 119.5
Sample A Female 147.8
Sample B Female 119.5
Sample C Male 137.8
Sample D Male 119.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 72.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.1
Samples: 4

Max nTPM: 74.8
Min nTPM: 68.4
Sample A Male 74.1
Sample B Male 68.4
Sample C Female 71.0
Sample D Female 74.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
68301371 Antisense, RP_041130_01_B06, Mouse strain C57BL/6J (56 days, male) 1.1

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