MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:576.3 nTPM
HPA Brain:854.0 nTPM
GTEx:576.3 nTPM
FANTOM5:1958.7 Scaled Tags Per Million
Pig:583.2 nTPM
Mouse:1161.1 nTPM
Allen mouse:23.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 854.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 622.1
2666 Male, age 74, left hemisphere 746.1
2411 Female, age 72, unknown 744.8
1827 Male, age 72, unknown 736.1
2219 Male, age 76, both hemispheres 664.9
2019 Male, age 18, unknown 594.0
1870 Female, age 42, unknown 592.2
1833 Male, age 53, unknown 578.2
2828 Female, age 72, unknown 565.7
1830 Male, age 51, unknown 513.1
2586 Male, age 75, left hemisphere 485.3
Dorsal raphe nucleus
nTPM: 737.1
2298 Female, age 72, unknown 913.5
2047 Male, age 72, unknown 841.2
1828 Male, age 53, unknown 713.4
2750 Male, age 76, both hemispheres 663.6
2016 Female, age 72, unknown 553.7
Inferior colliculus
nTPM: 564.5
2097 Female, age 72, unknown 625.0
2849 Male, age 72, unknown 552.0
1848 Female, age 42, unknown 544.8
1890 Male, age 53, unknown 536.2
Median raphe nucleus
nTPM: 854.0
2220 Male, age 76, midline 854.0
Periaquaductal grey, anterior
nTPM: 704.7
1947 Male, age 18, unknown 805.9
1795 Male, age 51, unknown 673.9
2502 Female, age 75, unknown 634.3
Periaquaductal grey, dorsal
nTPM: 594.7
1840 Male, age 53, unknown 652.9
2850 Male, age 76, both hemispheres 624.2
2464 Female, age 72, unknown 558.9
1831 Male, age 72, unknown 542.9
Periaquaductal grey, lateral
nTPM: 577.6
2272 Male, age 74, both hemispheres 627.5
2053 Male, age 18, unknown 562.6
2140 Male, age 76, both hemispheres 542.8
Pretectal area
nTPM: 679.3
1816 Male, age 51, unknown 875.4
1944 Female, age 72, unknown 767.4
2007 Male, age 72, unknown 767.3
1817 Female, age 42, unknown 746.6
2224 Female, age 72, unknown 722.7
1815 Male, age 53, unknown 689.6
2667 Female, age 75, unknown 686.5
2825 Male, age 18, unknown 612.2
2273 Male, age 74, both hemispheres 580.8
2407 Male, age 75, both hemispheres 549.1
2316 Male, age 76, right hemisphere 474.6
Red nucleus
nTPM: 586.0
1821 Female, age 72, unknown 750.5
2725 Female, age 75, unknown 713.7
2588 Male, age 74, left hemisphere 622.1
2503 Female, age 72, unknown 605.2
2584 Male, age 75, left hemisphere 582.1
1954 Female, age 42, unknown 567.5
1904 Male, age 53, unknown 553.6
1865 Male, age 51, unknown 547.6
2785 Male, age 18, unknown 545.1
2227 Male, age 72, unknown 522.8
2769 Male, age 72, unknown 520.4
2823 Male, age 76, right hemisphere 501.7
Substantia nigra
nTPM: 845.5
1916 Female, age 42, unknown 1201.1
1851 Male, age 51, unknown 980.9
2241 Male, age 72, unknown 973.3
1941 Male, age 53, unknown 938.3
1889 Female, age 72, unknown 795.4
2409 Female, age 72, unknown 783.7
2699 Male, age 18, unknown 774.8
2665 Male, age 74, both hemispheres 759.6
2590 Female, age 75, unknown 659.3
2583 Male, age 75, right hemisphere 588.3
Superior colliculus
nTPM: 579.2
2087 Female, age 72, unknown 668.4
2261 Male, age 18, unknown 661.3
1796 Male, age 53, unknown 660.7
2587 Male, age 74, left hemisphere 642.4
2668 Female, age 75, unknown 633.4
1839 Male, age 51, unknown 564.5
1895 Male, age 76, right hemisphere 542.8
2664 Male, age 75, both hemispheres 509.7
1913 Female, age 42, unknown 482.4
1995 Male, age 72, unknown 426.1
Ventral tegmental area
nTPM: 762.1
2410 Female, age 72, unknown 939.9
1915 Female, age 42, unknown 888.3
2218 Male, age 76, both hemispheres 823.8
2223 Female, age 72, unknown 659.4
1942 Male, age 51, unknown 653.9
2021 Male, age 53, unknown 607.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 576.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 576.3
Samples: 139

Max nTPM: 2060.0
Min nTPM: 246.6
Std nTPM: 270.9
Median nTPM: 494.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2060.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1875.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1282.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1204.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1182.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1169.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1125.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1114.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1006.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 994.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 992.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1958.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1958.7
FF:10158-103A5 76 years, female 1958.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 583.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 583.2
Samples: 4

Max nTPM: 768.3
Min nTPM: 358.3
Sample A Female 750.4
Sample B Female 455.9
Sample C Male 768.3
Sample D Male 358.3
Midbrain
nTPM: 566.8
Samples: 4

Max nTPM: 701.1
Min nTPM: 512.3
Sample A Female 524.1
Sample B Female 512.3
Sample C Male 701.1
Sample D Male 529.8
Periaqueductal gray
nTPM: 477.3
Samples: 3

Max nTPM: 583.0
Min nTPM: 398.4
Sample B Female 450.4
Sample C Male 583.0
Sample D Male 398.4
Superior colliculi
nTPM: 538.2
Samples: 4

Max nTPM: 636.9
Min nTPM: 385.3
Sample A Female 599.5
Sample B Female 385.3
Sample C Male 636.9
Sample D Male 531.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1161.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 1161.1
Samples: 4

Max nTPM: 1207.0
Min nTPM: 1098.4
Sample A Male 1098.4
Sample B Male 1166.7
Sample C Female 1207.0
Sample D Female 1172.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 23.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.0
69735168 Antisense, RP_050503_02_C01, Mouse strain C57BL/6J (56 days, male) 23.0

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