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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:485.8 nTPM
HPA Brain:674.8 nTPM
GTEx:485.8 nTPM
FANTOM5:1608.8 Scaled Tags Per Million
Pig:552.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

674.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 609.5
2194 Female, age 79, both hemispheres 677.6
2565 Male, age 75, midline 671.7
1981 Female, age 72, midline 643.3
2816 Male, age 47, midline 528.8
2048 Male, age 55, midline 526.0
Cervical spinal cord, dorsal horn
nTPM: 668.8
2296 Male, age 66, both hemispheres 871.2
2173 Female, age 72, unknown 752.0
2069 Male, age 47, both hemispheres 746.1
2297 Male, age 75, both hemispheres 602.3
1877 Male, age 55, unknown 548.5
2721 Male, age 90, both hemispheres 492.7
Cervical spinal cord, ventral horn
nTPM: 674.8
2480 Male, age 75, both hemispheres 875.1
2809 Male, age 90, both hemispheres 794.9
2068 Male, age 55, unknown 638.1
2820 Female, age 79, both hemispheres 602.6
2098 Female, age 72, unknown 590.6
2295 Male, age 66, both hemispheres 547.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

485.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 485.8
Samples: 159

Max nTPM: 2496.7
Min nTPM: 292.2
Std nTPM: 242.4
Median nTPM: 426.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2496.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1400.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1282.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1255.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1113.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1113.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 954.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 875.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 870.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 837.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 832.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 823.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 690.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 681.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 658.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 646.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 642.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 625.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 622.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 620.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 611.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 606.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 595.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 590.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 589.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 560.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 556.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 547.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 538.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 535.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 534.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 532.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 528.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 524.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 518.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 514.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 514.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 507.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 506.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 505.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 504.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 504.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 494.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 490.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 488.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 485.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 480.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 480.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 479.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 474.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 474.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 473.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 472.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 472.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 470.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 467.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 465.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 463.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 462.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 462.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 460.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 457.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 456.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 447.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 445.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 441.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 441.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 440.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 438.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 433.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 432.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 432.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 431.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 430.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 429.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 429.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 429.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 428.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 427.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 426.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 426.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 420.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 419.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 417.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 415.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 415.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 414.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 413.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 412.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 411.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 407.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 407.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 400.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 399.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 398.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 398.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 398.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 397.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 395.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 394.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 393.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 389.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 387.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 386.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 385.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 379.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 379.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 378.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 378.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 377.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 377.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 375.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 374.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 374.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 374.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 374.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 373.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 371.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 370.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 368.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 366.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 366.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 365.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 363.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 361.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 361.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 359.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 358.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 356.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 352.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 352.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 351.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 350.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 350.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 350.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 348.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 348.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 346.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 343.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 343.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 343.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 342.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 342.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 339.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 339.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 336.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 332.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 330.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 326.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 326.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 325.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 317.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 316.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 310.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 304.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 304.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 301.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 299.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 292.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1608.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1608.8
FF:10159-103A6 76 years, female 1876.3
FF:10181-103D1 60 years, female 1341.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

552.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 479.6
Samples: 4

Max nTPM: 494.2
Min nTPM: 438.5
Sample A Female 494.2
Sample B Female 438.5
Sample C Male 493.4
Sample D Male 492.3
Ventral spinal cord
nTPM: 552.4
Samples: 4

Max nTPM: 616.1
Min nTPM: 509.3
Sample A Female 518.6
Sample B Female 565.6
Sample C Male 616.1
Sample D Male 509.3

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