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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:424.5 nTPM
HPA Brain:619.7 nTPM
GTEx:424.5 nTPM
FANTOM5:217.5 Scaled Tags Per Million
Pig:263.5 nTPM
Mouse:0.2 nTPM
Allen mouse:15.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

619.7
Sample id Sample description nTPM
Amygdala
nTPM: 590.2
2814 Male, age 76, right hemisphere 763.6
2514 Male, age 75, right hemisphere 669.6
2695 Female, age 67, right hemisphere 555.3
1987 Female, age 91, left hemisphere 514.3
2517 Female, age 94, left hemisphere 448.3
Basal amygdala
nTPM: 463.8
2827 Female, age 67, right hemisphere 589.7
2609 Male, age 75, right hemisphere 538.4
2110 Male, age 80, left hemisphere 530.6
1955 Male, age 76, both hemispheres 425.3
2685 Female, age 94, left hemisphere 424.4
2243 Female, age 91, right hemisphere 274.7
Central amygdala
nTPM: 594.7
2515 Male, age 75, right hemisphere 714.2
2826 Female, age 94, left hemisphere 614.2
1905 Male, age 76, both hemispheres 608.0
2239 Male, age 80, left hemisphere 601.6
2701 Female, age 91, right hemisphere 435.7
Corticomedial amygdala
nTPM: 417.1
2428 Male, age 75, right hemisphere 518.8
2535 Female, age 67, right hemisphere 430.2
2429 Female, age 94, left hemisphere 421.3
2829 Male, age 80, left hemisphere 405.4
2242 Female, age 91, right hemisphere 403.0
2240 Male, age 76, both hemispheres 324.2
Lateral amygdala
nTPM: 619.7
2830 Female, age 67, right hemisphere 824.3
2516 Male, age 75, right hemisphere 785.2
1883 Male, age 76, both hemispheres 621.1
2256 Male, age 80, left hemisphere 615.7
2534 Female, age 94, left hemisphere 486.7
2255 Female, age 91, right hemisphere 384.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

424.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 424.5
Samples: 152

Max nTPM: 1213.6
Min nTPM: 6.9
Std nTPM: 164.4
Median nTPM: 404.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1213.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 863.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 830.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 824.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 818.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 751.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 735.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 729.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 704.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 661.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 660.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 655.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 645.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 645.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 631.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 630.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 614.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 603.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 599.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 598.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 596.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 585.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 584.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 580.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 579.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 578.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 576.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 575.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 563.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 560.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 554.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 540.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 535.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 532.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 524.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 518.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 518.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 517.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 514.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 508.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 500.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 499.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 493.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 490.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 487.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 479.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 477.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 474.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 469.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 466.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 463.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 461.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 459.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 458.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 455.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 454.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 453.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 453.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 444.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 441.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 440.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 438.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 437.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 436.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 436.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 434.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 434.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 431.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 426.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 426.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 424.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 424.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 422.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 421.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 417.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 411.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 398.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 398.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 398.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 397.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 395.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 391.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 389.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 388.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 383.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 382.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 377.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 375.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 374.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 364.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 359.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 359.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 353.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 352.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 350.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 349.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 348.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 346.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 340.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 340.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 334.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 329.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 329.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 327.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 326.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 325.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 323.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 323.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 322.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 321.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 320.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 319.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 315.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 314.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 314.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 312.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 307.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 303.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 303.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 303.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 301.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 298.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 296.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 290.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 290.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 286.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 281.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 277.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 274.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 271.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 270.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 268.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 265.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 265.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 264.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 256.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 250.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 247.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 242.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 238.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 231.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 217.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 213.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 206.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 202.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 194.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 193.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 160.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 159.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 150.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 144.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 6.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

217.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 217.5
FF:10151-102I7 76 years, female 217.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

263.5
Pig sample Sample description nTPM
Amygdala
nTPM: 263.5
Samples: 4

Max nTPM: 280.0
Min nTPM: 219.8
Sample A Female 219.8
Sample B Female 275.0
Sample C Male 280.0
Sample D Male 279.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 650.9
Samples: 4

Max nTPM: 741.8
Min nTPM: 589.3
Sample A Male 628.3
Sample B Male 589.3
Sample C Female 741.8
Sample D Female 644.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.7
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 16.9
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 14.5
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1
Cortical subplate
Expression energy: 15.7
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 16.9
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 14.5
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1

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