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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1398.0 nTPM
FANTOM5:478.2 Scaled Tags Per Million
Pig:448.3 nTPM
Allen mouse:16.3 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1398.0
Sample id Sample description nTPM
Area postrema
nTPM: 883.2
2799 Male, age 61, both hemispheres 1046.1
2306 Male, age 80, both hemispheres 927.1
2054 Male, age 76, both hemispheres 676.3
Dorsal medullary reticular nucleus
nTPM: 911.5
2373 Male, age 61, both hemispheres 959.0
2040 Female, age 85, both hemispheres 924.6
2088 Male, age 76, both hemispheres 850.9
Dorsal motor vagal complex
nTPM: 773.4
2797 Male, age 61, both hemispheres 1195.0
2185 Male, age 76, both hemispheres 1016.1
2807 Female, age 85, both hemispheres 829.1
2643 Male, age 74, both hemispheres 752.8
2133 Female, age 91, both hemispheres 690.7
2000 Male, age 74, unknown 585.2
2813 Female, age 72, unknown 577.0
2844 Male, age 55, unknown 541.2
Gigantocellular reticular nuclei, medullary
nTPM: 933.1
2387 Female, age 91, both hemispheres 1323.8
2314 Male, age 61, both hemispheres 1239.4
1876 Female, age 85, both hemispheres 1045.9
2310 Male, age 80, both hemispheres 762.7
2022 Male, age 76, right hemisphere 714.5
2462 Male, age 74, both hemispheres 512.5
Gigantocellular reticular nuclei, pars
nTPM: 774.4
2706 Male, age 80, both hemispheres 824.0
2330 Male, age 80, both hemispheres 809.4
2336 Male, age 61, both hemispheres 779.2
2084 Female, age 85, both hemispheres 761.6
2168 Male, age 76, both hemispheres 697.6
Inferior olive
nTPM: 1010.1
2178 Male, age 61, both hemispheres 1145.7
2085 Female, age 85, both hemispheres 1035.0
2379 Male, age 80, both hemispheres 995.7
2628 Female, age 91, both hemispheres 994.5
2563 Male, age 74, both hemispheres 879.8
Lateral medullary reticular nucleus
nTPM: 990.3
2852 Male, age 80, both hemispheres 1200.3
2190 Female, age 85, both hemispheres 1070.4
2374 Male, age 61, both hemispheres 1011.7
2804 Female, age 91, both hemispheres 970.4
2305 Male, age 74, both hemispheres 868.1
2044 Male, age 76, both hemispheres 821.2
Medial olivary nucleus
nTPM: 1064.8
1962 Male, age 76, both hemispheres 1141.9
2138 Female, age 91, both hemispheres 1097.6
1943 Male, age 61, both hemispheres 1089.3
2851 Male, age 80, both hemispheres 930.5
Medial vestibular nucleus
nTPM: 814.1
2803 Female, age 91, both hemispheres 1006.2
2801 Male, age 74, both hemispheres 986.0
2093 Male, age 80, both hemispheres 824.6
2624 Male, age 61, both hemispheres 810.0
2743 Female, age 85, both hemispheres 773.4
2134 Male, age 76, both hemispheres 484.6
Motor hypoglossal nucleus
nTPM: 874.6
2132 Female, age 85, both hemispheres 1090.7
2125 Female, age 91, both hemispheres 1073.6
2182 Male, age 80, both hemispheres 1005.6
2461 Male, age 61, both hemispheres 720.9
2277 Male, age 76, both hemispheres 482.1
Nucleus ambiguus
nTPM: 985.8
2071 Male, age 76, both hemispheres 1311.3
2096 Female, age 85, both hemispheres 660.3
Nucleus cuneatus
nTPM: 976.8
2808 Female, age 85, both hemispheres 1298.6
2380 Male, age 80, both hemispheres 1233.5
2381 Male, age 80, both hemispheres 1127.8
2100 Male, age 76, both hemispheres 921.9
2376 Male, age 61, both hemispheres 908.0
2805 Female, age 91, both hemispheres 880.4
2562 Male, age 61, both hemispheres 845.0
2564 Male, age 74, both hemispheres 825.1
2131 Male, age 76, both hemispheres 750.7
Nucleus gracilis
nTPM: 1052.9
2382 Male, age 80, both hemispheres 1223.3
2299 Female, age 85, both hemispheres 1079.6
2627 Male, age 74, both hemispheres 855.9
Nucleus raphe obscurus
nTPM: 1398.0
2845 Female, age 85, midline 1723.7
2142 Male, age 76, midline 1347.1
2800 Male, age 61, midline 1123.1
Nucleus raphe pallidus
nTPM: 1101.4
2145 Male, age 76, midline 1182.0
1924 Male, age 61, midline 1103.1
2183 Male, age 80, midline 1019.1
Nucleus tractus solitarii
nTPM: 512.3
2144 Female, age 91, right hemisphere 553.6
2191 Female, age 85, both hemispheres 538.4
2656 Male, age 76, both hemispheres 516.4
2307 Male, age 80, both hemispheres 440.9
Parvicellular reticular nuclei
nTPM: 781.2
2119 Male, age 80, both hemispheres 902.4
2095 Male, age 76, both hemispheres 874.2
2558 Male, age 74, both hemispheres 566.8
Parvicellular reticular nuclei, medullary
nTPM: 748.7
2189 Female, age 91, both hemispheres 855.0
2091 Female, age 85, both hemispheres 743.5
2181 Male, age 80, left hemisphere 647.5
Peritrigeminal nucleus
nTPM: 939.9
2067 Female, age 85, both hemispheres 1015.6
2136 Male, age 76, both hemispheres 933.5
2179 Male, age 61, both hemispheres 870.7
Prepositus hypoglossal nucleus
nTPM: 958.1
2855 Female, age 85, right hemisphere 1271.2
2086 Male, age 80, both hemispheres 645.1
Spinal trigeminal nucleus, caudal
nTPM: 852.6
2308 Male, age 80, both hemispheres 958.4
2312 Male, age 61, both hemispheres 884.6
2447 Male, age 76, both hemispheres 859.3
2390 Female, age 91, both hemispheres 858.9
2642 Male, age 74, both hemispheres 702.1
Spinal trigeminal nucleus, interpolar
nTPM: 751.1
2389 Female, age 91, both hemispheres 904.9
2386 Female, age 85, both hemispheres 871.2
2033 Male, age 80, both hemispheres 761.8
2066 Male, age 76, right hemisphere 623.7
2625 Male, age 61, both hemispheres 593.7
Spinal vestibular nucleus
nTPM: 878.8
2806 Female, age 85, both hemispheres 1073.1
2748 Male, age 76, both hemispheres 1023.7
2384 Male, age 74, both hemispheres 888.5
2186 Female, age 91, both hemispheres 875.1
2780 Male, age 80, both hemispheres 760.7
2796 Male, age 61, both hemispheres 651.7
Superior vestibular nucleus
nTPM: 811.0
2015 Male, age 80, both hemispheres 905.2
2061 Male, age 76, both hemispheres 771.9
2383 Male, age 74, both hemispheres 755.8
Ventral medullary reticular nucleus
nTPM: 1085.4
2372 Male, age 61, both hemispheres 1212.3
2060 Male, age 76, both hemispheres 958.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 914.0
2118 Male, age 80, both hemispheres 1045.5
2302 Female, age 91, both hemispheres 902.8
2180 Male, age 61, both hemispheres 898.8
2741 Female, age 85, both hemispheres 869.9
1986 Male, age 76, both hemispheres 853.0

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

478.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 478.2
FF:10038-101F2 18-64 years, mixed 566.3
FF:10174-103C3 60 years, female 506.5
FF:10155-103A2 76 years, female 362.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

448.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 448.3
Samples: 4

Max nTPM: 511.6
Min nTPM: 367.5
Sample A Female 437.4
Sample B Female 367.5
Sample C Male 476.7
Sample D Male 511.6

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.3
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 16.3
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 18.3
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 14.3
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1
Medulla oblongata
Expression energy: 16.3
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 18.3
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 14.3
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1

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