PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:1398.0 nTPM
FANTOM5:478.2 Scaled Tags Per Million
Pig:448.3 nTPM
Mouse:0.0 nTPM
Allen mouse:16.3 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 1398.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1072.9
2188 Female, age 91, both hemispheres 1387.0
2301 Female, age 85, both hemispheres 1322.5
2090 Male, age 80, both hemispheres 1023.4
1984 Male, age 76, both hemispheres 558.6
Area postrema
nTPM: 883.2
2799 Male, age 61, both hemispheres 1046.1
2306 Male, age 80, both hemispheres 927.1
2054 Male, age 76, both hemispheres 676.3
Dorsal cochlear nucleus
nTPM: 846.3
2187 Female, age 91, both hemispheres 1166.6
2378 Male, age 80, both hemispheres 862.2
2802 Male, age 74, right hemisphere 823.4
2058 Male, age 76, both hemispheres 707.4
2370 Male, age 61, both hemispheres 672.2
Dorsal medullary reticular nucleus
nTPM: 911.5
2373 Male, age 61, both hemispheres 959.0
2040 Female, age 85, both hemispheres 924.6
2088 Male, age 76, both hemispheres 850.9
Dorsal motor vagal complex
nTPM: 773.4
2797 Male, age 61, both hemispheres 1195.0
2185 Male, age 76, both hemispheres 1016.1
2807 Female, age 85, both hemispheres 829.1
2643 Male, age 74, both hemispheres 752.8
2133 Female, age 91, both hemispheres 690.7
2000 Male, age 74, unknown 585.2
2813 Female, age 72, unknown 577.0
2844 Male, age 55, unknown 541.2
Dorsal tegmental nucleus
nTPM: 789.5
2083 Male, age 80, both hemispheres 997.5
2326 Male, age 74, both hemispheres 840.2
1936 Male, age 76, left hemisphere 677.2
2358 Male, age 61, both hemispheres 643.0
Dorsolateral tegmental area
nTPM: 816.6
2751 Female, age 85, both hemispheres 1319.2
2654 Male, age 80, both hemispheres 965.6
2337 Male, age 61, both hemispheres 695.6
2360 Male, age 74, both hemispheres 594.1
2141 Male, age 76, both hemispheres 508.5
Gigantocellular reticular nuclei, medullary
nTPM: 933.1
2387 Female, age 91, both hemispheres 1323.8
2314 Male, age 61, both hemispheres 1239.4
1876 Female, age 85, both hemispheres 1045.9
2310 Male, age 80, both hemispheres 762.7
2022 Male, age 76, right hemisphere 714.5
2462 Male, age 74, both hemispheres 512.5
Gigantocellular reticular nuclei, pars
nTPM: 774.4
2706 Male, age 80, both hemispheres 824.0
2330 Male, age 80, both hemispheres 809.4
2336 Male, age 61, both hemispheres 779.2
2084 Female, age 85, both hemispheres 761.6
2168 Male, age 76, both hemispheres 697.6
Inferior olive
nTPM: 1010.1
2178 Male, age 61, both hemispheres 1145.7
2085 Female, age 85, both hemispheres 1035.0
2379 Male, age 80, both hemispheres 995.7
2628 Female, age 91, both hemispheres 994.5
2563 Male, age 74, both hemispheres 879.8
Kolliker-Fuse nucleus
nTPM: 952.5
2793 Female, age 91, left hemisphere 1304.7
2315 Male, age 76, right hemisphere 780.0
2163 Male, age 80, both hemispheres 772.9
Lateral lemniscal nuclei
nTPM: 822.0
2320 Female, age 91, left hemisphere 1106.1
2036 Male, age 80, both hemispheres 909.8
2169 Male, age 76, both hemispheres 785.2
2746 Female, age 85, left hemisphere 670.3
2453 Male, age 74, right hemisphere 638.8
Lateral medullary reticular nucleus
nTPM: 990.3
2852 Male, age 80, both hemispheres 1200.3
2190 Female, age 85, both hemispheres 1070.4
2374 Male, age 61, both hemispheres 1011.7
2804 Female, age 91, both hemispheres 970.4
2305 Male, age 74, both hemispheres 868.1
2044 Male, age 76, both hemispheres 821.2
Lateral parabrachial nucleus
nTPM: 1087.5
2792 Male, age 76, both hemispheres 1480.4
2790 Male, age 61, both hemispheres 1221.3
2013 Male, age 80, both hemispheres 898.7
2139 Female, age 85, right hemisphere 749.7
Lateral vestibular nucleus
nTPM: 883.3
2311 Male, age 80, both hemispheres 1036.5
2184 Male, age 76, both hemispheres 730.1
Locus coeruleus
nTPM: 675.7
2720 Male, age 74, both hemispheres 854.0
2317 Female, age 72, unknown 748.9
2162 Male, age 80, both hemispheres 738.4
2014 Male, age 55, unknown 728.9
2123 Female, age 91, both hemispheres 631.5
2788 Male, age 74, unknown 544.3
1980 Male, age 76, both hemispheres 484.2
Medial olivary nucleus
nTPM: 1064.8
1962 Male, age 76, both hemispheres 1141.9
2138 Female, age 91, both hemispheres 1097.6
1943 Male, age 61, both hemispheres 1089.3
2851 Male, age 80, both hemispheres 930.5
Medial parabrachial nucleus
nTPM: 976.6
2170 Female, age 91, both hemispheres 1223.1
2463 Female, age 85, right hemisphere 1065.6
2156 Male, age 61, both hemispheres 906.8
2854 Male, age 80, both hemispheres 869.6
2786 Male, age 76, both hemispheres 818.1
Medial periolivary nuclei
nTPM: 782.5
2458 Female, age 91, both hemispheres 987.4
2081 Male, age 80, both hemispheres 848.5
2791 Male, age 74, right hemisphere 808.6
2063 Male, age 76, both hemispheres 793.9
2171 Female, age 85, both hemispheres 474.4
Medial vestibular nucleus
nTPM: 814.1
2803 Female, age 91, both hemispheres 1006.2
2801 Male, age 74, both hemispheres 986.0
2093 Male, age 80, both hemispheres 824.6
2624 Male, age 61, both hemispheres 810.0
2743 Female, age 85, both hemispheres 773.4
2134 Male, age 76, both hemispheres 484.6
Motor facial nucleus
nTPM: 808.4
2795 Female, age 91, both hemispheres 947.0
2697 Female, age 85, both hemispheres 874.4
2126 Male, age 61, both hemispheres 845.3
2365 Male, age 74, right hemisphere 826.5
2327 Male, age 80, both hemispheres 679.6
2062 Male, age 76, both hemispheres 677.5
Motor hypoglossal nucleus
nTPM: 874.6
2132 Female, age 85, both hemispheres 1090.7
2125 Female, age 91, both hemispheres 1073.6
2182 Male, age 80, both hemispheres 1005.6
2461 Male, age 61, both hemispheres 720.9
2277 Male, age 76, both hemispheres 482.1
Motor trigeminal nucleus
nTPM: 759.1
2321 Female, age 91, both hemispheres 1005.0
2560 Male, age 74, both hemispheres 795.8
2309 Male, age 76, both hemispheres 720.3
2079 Male, age 80, both hemispheres 689.0
2335 Male, age 61, both hemispheres 585.3
Nuclei of the trapezoid body
nTPM: 762.3
2368 Female, age 91, both hemispheres 1037.6
2166 Male, age 80, both hemispheres 849.9
1983 Male, age 76, both hemispheres 747.0
2159 Male, age 61, both hemispheres 676.1
2735 Female, age 85, both hemispheres 500.9
Nucleus ambiguus
nTPM: 985.8
2071 Male, age 76, both hemispheres 1311.3
2096 Female, age 85, both hemispheres 660.3
Nucleus cuneatus
nTPM: 976.8
2808 Female, age 85, both hemispheres 1298.6
2380 Male, age 80, both hemispheres 1233.5
2381 Male, age 80, both hemispheres 1127.8
2100 Male, age 76, both hemispheres 921.9
2376 Male, age 61, both hemispheres 908.0
2805 Female, age 91, both hemispheres 880.4
2562 Male, age 61, both hemispheres 845.0
2564 Male, age 74, both hemispheres 825.1
2131 Male, age 76, both hemispheres 750.7
Nucleus gracilis
nTPM: 1052.9
2382 Male, age 80, both hemispheres 1223.3
2299 Female, age 85, both hemispheres 1079.6
2627 Male, age 74, both hemispheres 855.9
Nucleus raphe magnus
nTPM: 675.9
2459 Female, age 91, both hemispheres 941.6
2328 Male, age 80, both hemispheres 787.3
2051 Male, age 76, both hemispheres 767.1
2455 Male, age 74, both hemispheres 686.7
2160 Male, age 61, both hemispheres 478.9
2172 Female, age 85, both hemispheres 393.6
Nucleus raphe obscurus
nTPM: 1398.0
2845 Female, age 85, midline 1723.7
2142 Male, age 76, midline 1347.1
2800 Male, age 61, midline 1123.1
Nucleus raphe pallidus
nTPM: 1101.4
2145 Male, age 76, midline 1182.0
1924 Male, age 61, midline 1103.1
2183 Male, age 80, midline 1019.1
Nucleus tractus solitarii
nTPM: 512.3
2144 Female, age 91, right hemisphere 553.6
2191 Female, age 85, both hemispheres 538.4
2656 Male, age 76, both hemispheres 516.4
2307 Male, age 80, both hemispheres 440.9
Paramedian reticular nucleus
nTPM: 844.2
2052 Male, age 76, both hemispheres 916.3
2057 Male, age 80, both hemispheres 908.6
2050 Female, age 85, both hemispheres 777.9
2313 Male, age 61, both hemispheres 774.1
Parvicellular reticular nuclei
nTPM: 781.2
2119 Male, age 80, both hemispheres 902.4
2095 Male, age 76, both hemispheres 874.2
2558 Male, age 74, both hemispheres 566.8
Parvicellular reticular nuclei, medullary
nTPM: 748.7
2189 Female, age 91, both hemispheres 855.0
2091 Female, age 85, both hemispheres 743.5
2181 Male, age 80, left hemisphere 647.5
Pedunculopontine tegmental nucleus
nTPM: 771.3
2334 Male, age 80, both hemispheres 967.4
1921 Female, age 85, both hemispheres 710.2
2338 Male, age 61, both hemispheres 636.2
Peritrigeminal nucleus
nTPM: 939.9
2067 Female, age 85, both hemispheres 1015.6
2136 Male, age 76, both hemispheres 933.5
2179 Male, age 61, both hemispheres 870.7
Pontine nuclei
nTPM: 832.3
2319 Female, age 91, both hemispheres 1101.5
2454 Male, age 74, left hemisphere 1062.9
2109 Female, age 72, unknown 1010.5
1863 Male, age 55, unknown 905.8
1968 Male, age 76, left hemisphere 849.1
2115 Male, age 80, left hemisphere 665.7
2727 Male, age 61, right hemisphere 550.1
2787 Female, age 85, both hemispheres 512.7
Pontine raphe nucleus
nTPM: 711.1
2853 Male, age 76, midline 728.7
2122 Female, age 85, midline 693.4
Posteroventral cochlear nucleus
nTPM: 1085.8
2135 Female, age 91, both hemispheres 1497.3
2341 Male, age 80, both hemispheres 1426.8
2070 Male, age 76, both hemispheres 946.9
2371 Male, age 61, both hemispheres 889.2
2752 Female, age 85, both hemispheres 669.0
Prepositus hypoglossal nucleus
nTPM: 958.1
2855 Female, age 85, right hemisphere 1271.2
2086 Male, age 80, both hemispheres 645.1
Principal sensory trigeminal nucleus
nTPM: 756.1
2367 Female, age 91, left hemisphere 1090.1
2008 Male, age 80, left hemisphere 702.5
2324 Male, age 76, both hemispheres 698.7
2158 Male, age 61, both hemispheres 533.2
Reticular pontine nucleus, caudal
nTPM: 950.6
2457 Female, age 91, both hemispheres 1253.9
2092 Male, age 76, both hemispheres 971.5
2559 Male, age 74, both hemispheres 908.8
2332 Male, age 80, right hemisphere 668.2
Reticular pontine nucleus, oral
nTPM: 959.2
2366 Female, age 91, both hemispheres 1213.7
2361 Male, age 74, both hemispheres 932.6
1939 Male, age 80, both hemispheres 907.8
2012 Female, age 85, both hemispheres 900.5
2167 Male, age 76, both hemispheres 841.6
Reticulotegmental nucleus
nTPM: 746.1
2322 Female, age 91, both hemispheres 951.1
2333 Male, age 80, both hemispheres 768.9
2452 Male, age 74, both hemispheres 737.2
2325 Male, age 76, both hemispheres 527.3
Spinal trigeminal nucleus, caudal
nTPM: 852.6
2308 Male, age 80, both hemispheres 958.4
2312 Male, age 61, both hemispheres 884.6
2447 Male, age 76, both hemispheres 859.3
2390 Female, age 91, both hemispheres 858.9
2642 Male, age 74, both hemispheres 702.1
Spinal trigeminal nucleus, interpolar
nTPM: 751.1
2389 Female, age 91, both hemispheres 904.9
2386 Female, age 85, both hemispheres 871.2
2033 Male, age 80, both hemispheres 761.8
2066 Male, age 76, right hemisphere 623.7
2625 Male, age 61, both hemispheres 593.7
Spinal trigeminal nucleus, oral
nTPM: 693.8
2164 Male, age 80, both hemispheres 744.6
1978 Male, age 76, both hemispheres 729.6
2737 Female, age 85, both hemispheres 607.1
Spinal vestibular nucleus
nTPM: 878.8
2806 Female, age 85, both hemispheres 1073.1
2748 Male, age 76, both hemispheres 1023.7
2384 Male, age 74, both hemispheres 888.5
2186 Female, age 91, both hemispheres 875.1
2780 Male, age 80, both hemispheres 760.7
2796 Male, age 61, both hemispheres 651.7
Subcoeruleus area
nTPM: 880.2
2369 Female, age 85, left hemisphere 1502.9
2089 Male, age 76, left hemisphere 795.8
1958 Male, age 80, both hemispheres 780.6
2451 Male, age 74, both hemispheres 711.6
2323 Female, age 91, left hemisphere 610.2
Superior olive
nTPM: 869.2
2020 Male, age 76, both hemispheres 1086.3
2561 Female, age 91, both hemispheres 828.5
2329 Male, age 80, right hemisphere 826.7
2364 Male, age 74, right hemisphere 822.3
1875 Female, age 85, both hemispheres 782.4
Superior vestibular nucleus
nTPM: 811.0
2015 Male, age 80, both hemispheres 905.2
2061 Male, age 76, both hemispheres 771.9
2383 Male, age 74, both hemispheres 755.8
Ventral medullary reticular nucleus
nTPM: 1085.4
2372 Male, age 61, both hemispheres 1212.3
2060 Male, age 76, both hemispheres 958.5
Ventral periolivary nuclei
nTPM: 817.9
2023 Male, age 76, both hemispheres 1228.4
2794 Female, age 91, left hemisphere 753.1
2165 Male, age 80, both hemispheres 729.7
2130 Female, age 85, both hemispheres 560.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 914.0
2118 Male, age 80, both hemispheres 1045.5
2302 Female, age 91, both hemispheres 902.8
2180 Male, age 61, both hemispheres 898.8
2741 Female, age 85, both hemispheres 869.9
1986 Male, age 76, both hemispheres 853.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 841.9
2456 Female, age 91, both hemispheres 1076.3
1959 Male, age 76, both hemispheres 919.0
2359 Male, age 61, both hemispheres 872.0
2840 Female, age 85, both hemispheres 779.1
2161 Male, age 80, both hemispheres 744.2
2449 Male, age 74, both hemispheres 660.8

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 478.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 467.7
FF:10182-103D2 60 years, female 584.2
FF:10165-103B3 76 years, female 351.2
Medulla oblongata
Scaled Tags Per Million: 478.2
FF:10038-101F2 18-64 years, mixed 566.3
FF:10174-103C3 60 years, female 506.5
FF:10155-103A2 76 years, female 362.0
Pons
Scaled Tags Per Million: 444.7
FF:10033-101E6 18-54 years, mixed 444.7

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 448.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 448.3
Samples: 4

Max nTPM: 511.6
Min nTPM: 367.5
Sample A Female 437.4
Sample B Female 367.5
Sample C Male 476.7
Sample D Male 511.6
Pons
nTPM: 313.9
Samples: 4

Max nTPM: 430.2
Min nTPM: 224.4
Sample A Female 224.4
Sample B Female 270.1
Sample C Male 331.0
Sample D Male 430.2

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 0.0
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 934.6
Samples: 4

Max nTPM: 960.6
Min nTPM: 907.1
Sample A Male 949.9
Sample B Male 920.6
Sample C Female 907.1
Sample D Female 960.6

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 16.3
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 16.3
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 18.3
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 14.3
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1
Medulla oblongata
Expression energy: 16.3
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 18.3
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 14.3
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1
Pons
Expression energy: 15.6
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 17.9
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 13.3
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1
Pons
Expression energy: 15.6
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 17.9
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 13.3
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1

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