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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:219.2 nTPM
HPA Brain:166.6 nTPM
GTEx:219.2 nTPM
FANTOM5:61.7 Scaled Tags Per Million
Pig:142.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 166.6
1981 Female, age 72, midline 200.9
2194 Female, age 79, both hemispheres 188.8
2565 Male, age 75, midline 172.7
2816 Male, age 47, midline 150.3
2048 Male, age 55, midline 120.0
Cervical spinal cord, dorsal horn
nTPM: 159.4
2173 Female, age 72, unknown 200.5
2296 Male, age 66, both hemispheres 179.5
2069 Male, age 47, both hemispheres 164.4
1877 Male, age 55, unknown 141.9
2721 Male, age 90, both hemispheres 135.8
2297 Male, age 75, both hemispheres 134.1
Cervical spinal cord, ventral horn
nTPM: 166.0
2480 Male, age 75, both hemispheres 192.3
2098 Female, age 72, unknown 176.2
2068 Male, age 55, unknown 174.2
2809 Male, age 90, both hemispheres 165.7
2295 Male, age 66, both hemispheres 150.9
2820 Female, age 79, both hemispheres 136.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

219.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 219.2
Samples: 159

Max nTPM: 392.9
Min nTPM: 71.9
Std nTPM: 52.9
Median nTPM: 212.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 392.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 387.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 376.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 357.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 346.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 335.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 333.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 324.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 312.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 301.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 295.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 295.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 290.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 282.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 282.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 281.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 280.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 279.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 276.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 276.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 274.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 271.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 267.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 266.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 266.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 263.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 263.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 263.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 260.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 259.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 258.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 257.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 256.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 254.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 254.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 254.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 254.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 252.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 251.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 250.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 250.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 249.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 249.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 247.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 247.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 247.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 246.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 245.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 245.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 244.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 242.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 241.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 240.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 238.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 237.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 237.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 237.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 235.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 234.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 234.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 233.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 229.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 228.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 227.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 224.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 223.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 222.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 222.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 222.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 221.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 221.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 220.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 219.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 217.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 215.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 215.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 214.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 214.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 213.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 212.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 212.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 212.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 211.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 211.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 210.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 208.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 208.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 206.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 205.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 204.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 203.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 203.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 203.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 202.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 201.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 198.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 197.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 196.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 196.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 196.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 195.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 193.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 193.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 192.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 192.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 192.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 191.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 191.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 191.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 190.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 189.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 188.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 187.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 186.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 186.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 186.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 186.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 185.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 184.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 184.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 183.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 182.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 181.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 181.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 180.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 180.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 180.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 176.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 175.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 175.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 174.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 174.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 173.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 172.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 171.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 170.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 170.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 169.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 169.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 168.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 165.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 164.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 164.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 161.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 158.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 156.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 155.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 153.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 145.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 142.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 141.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 139.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 136.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 135.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 132.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 130.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 120.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 111.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 71.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

61.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 61.7
FF:10181-103D1 60 years, female 74.1
FF:10159-103A6 76 years, female 49.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

142.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 116.8
Samples: 4

Max nTPM: 131.9
Min nTPM: 96.2
Sample A Female 118.8
Sample B Female 120.3
Sample C Male 131.9
Sample D Male 96.2
Ventral spinal cord
nTPM: 142.8
Samples: 4

Max nTPM: 171.3
Min nTPM: 106.0
Sample A Female 134.3
Sample B Female 171.3
Sample C Male 159.4
Sample D Male 106.0

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