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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:988.5 nTPM
FANTOM5:91.8 Scaled Tags Per Million
Pig:202.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003365Antibody HPA055361
Glial cells Not detectedLow
Neuronal cells HighNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

988.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 988.5
Samples: 246

Max nTPM: 2050.5
Min nTPM: 547.9
Std nTPM: 225.9
Median nTPM: 953.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2050.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1956.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1680.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1669.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1666.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1625.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1559.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1539.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1520.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1479.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1435.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1423.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1416.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1412.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1386.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1346.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1345.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1335.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1309.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1306.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1298.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1297.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1291.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1275.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1259.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1253.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1252.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1243.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1225.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1224.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1218.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1217.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1201.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1200.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1199.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1192.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1188.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1188.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1179.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1179.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1179.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1176.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1175.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1174.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1170.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1158.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1152.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1144.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1143.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1142.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1140.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1131.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1120.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1120.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1113.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1112.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1109.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1104.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1097.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1093.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1092.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1089.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1081.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1076.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1073.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1072.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1070.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1066.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1066.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1064.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1057.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1054.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1045.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1045.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1043.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1042.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1036.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1035.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1033.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1033.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1032.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1029.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1029.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1028.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1028.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1027.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1024.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1018.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1018.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1017.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1015.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1014.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1013.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1013.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1010.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1008.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1005.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1004.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1003.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1003.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 999.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 996.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 991.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 991.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 988.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 984.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 982.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 979.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 972.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 972.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 972.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 969.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 968.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 966.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 964.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 964.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 963.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 963.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 962.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 962.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 960.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 956.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 954.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 951.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 948.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 945.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 940.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 937.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 936.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 934.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 934.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 932.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 931.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 931.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 928.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 928.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 927.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 926.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 919.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 917.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 915.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 913.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 909.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 909.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 905.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 902.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 902.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 900.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 899.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 899.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 893.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 893.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 891.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 891.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 889.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 889.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 888.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 888.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 888.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 887.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 884.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 883.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 882.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 878.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 871.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 871.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 867.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 866.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 863.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 860.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 859.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 858.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 857.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 857.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 856.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 854.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 852.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 848.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 845.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 845.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 845.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 844.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 842.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 841.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 841.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 839.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 834.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 834.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 833.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 833.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 833.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 829.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 826.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 821.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 819.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 819.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 816.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 814.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 811.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 808.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 807.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 805.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 805.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 805.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 803.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 802.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 802.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 800.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 799.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 797.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 797.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 793.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 785.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 784.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 783.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 777.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 775.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 773.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 766.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 761.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 759.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 758.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 756.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 749.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 747.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 741.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 740.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 735.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 729.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 725.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 725.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 723.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 722.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 716.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 688.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 685.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 684.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 681.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 655.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 655.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 643.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 617.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 594.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 578.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 560.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 547.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 91.8
FF:10164-103B2 76 years, female 91.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.0
Pig sample Sample description nTPM
Caudate
nTPM: 202.0
Samples: 4

Max nTPM: 236.6
Min nTPM: 169.0
Sample A Female 181.5
Sample B Female 236.6
Sample C Male 220.7
Sample D Male 169.0

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