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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1674.5 nTPM
HPA:1400.5 nTPM
GTEx:1674.5 nTPM
FANTOM5:168.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003365Antibody HPA055361
Glandular cells MediumMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1400.5
overview
Male, age 65
Small intestine sample 232
nTPM: 1846.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1281.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1242.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1231.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1674.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1674.5
Samples: 187

Max nTPM: 3063.9
Min nTPM: 907.2
Std nTPM: 417.3
Median nTPM: 1630.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 3063.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2919.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2875.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2744.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2660.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2591.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 2590.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2542.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2520.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2413.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2407.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2396.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2371.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2367.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2342.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2297.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2288.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2225.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2214.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 2213.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2198.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2189.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2177.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 2165.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2122.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2115.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2093.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2081.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2078.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2076.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2070.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2026.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2022.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2006.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1983.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1983.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1979.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1977.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1962.0
GTEX-1192X-2526-SM-59868 50-59 years, male 1955.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1949.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1948.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1939.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1937.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1926.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1925.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1904.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1903.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1902.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1899.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1895.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1893.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1889.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1887.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1887.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 1883.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1875.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1862.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1852.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1842.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1841.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1840.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1839.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1831.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1816.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1815.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1805.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1793.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1787.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1782.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1770.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1768.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1762.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1755.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1750.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1750.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1746.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1740.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1734.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1733.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1717.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1716.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1715.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1704.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1666.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1656.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1648.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1646.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1645.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1643.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1635.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1632.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1630.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1630.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1628.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1626.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1625.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1613.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1612.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1609.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1605.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1585.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1582.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1569.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1564.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1547.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1543.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1534.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1534.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1533.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1527.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1518.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1515.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1497.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1493.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1485.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1484.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1484.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1483.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1483.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1475.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1469.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1467.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1466.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1465.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1464.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1459.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1454.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1453.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1453.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1448.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1447.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1402.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1382.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1382.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1380.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1376.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1365.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1351.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1344.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1342.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1341.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1332.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1330.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1330.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1323.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1320.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1319.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1315.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1308.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1298.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1290.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1282.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1280.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1279.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1279.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 1279.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1274.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1245.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1243.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1233.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1225.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1207.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1204.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1191.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1172.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1169.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1165.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1164.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1146.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1144.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1139.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1135.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1127.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1124.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1122.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1098.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1090.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1076.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1065.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1050.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1041.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1038.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1023.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1009.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 961.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 907.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

168.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 168.6
FF:10024-101D6 15,40,85 years, mixed 168.6

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