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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2244.5 nTPM
GTEx:2244.5 nTPM
FANTOM5:321.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003365Antibody HPA055361
Squamous epithelial cells MediumHigh





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2244.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2244.5
Samples: 156

Max nTPM: 5625.8
Min nTPM: 1331.1
Std nTPM: 542.5
Median nTPM: 2146.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 5625.8
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 3930.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 3743.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 3723.2
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 3583.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 3259.7
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 3188.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3072.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 3002.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2983.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2961.8
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2958.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2940.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2875.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2863.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2849.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2836.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2813.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2796.7
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2778.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2762.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2730.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2717.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2685.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2674.6
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2654.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2637.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2617.5
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2596.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2595.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2562.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2560.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2542.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2539.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2526.8
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2506.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2504.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2489.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2480.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2476.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2472.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2467.9
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2463.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2454.2
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2452.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2450.1
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2435.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 2424.3
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2412.5
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2411.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 2407.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2390.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2387.4
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2384.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2371.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2347.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2337.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2324.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2307.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2298.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2292.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2287.4
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2287.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2271.7
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 2266.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2265.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2263.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2261.7
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2259.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 2230.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2228.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2226.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2226.5
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2215.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2194.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2164.8
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 2154.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2147.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2144.6
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2142.7
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2133.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2130.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2114.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 2110.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2110.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 2110.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2108.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2100.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 2089.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2085.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2052.4
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 2052.1
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2047.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2035.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 2034.7
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2032.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2018.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 2014.2
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 2001.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1999.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1997.5
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1991.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1990.9
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1989.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1988.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1979.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 1971.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1970.6
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1957.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1955.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1952.8
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1952.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1950.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1943.7
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1934.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1916.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1916.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1898.7
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1896.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1896.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1876.1
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1869.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1863.2
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1848.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1845.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1826.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1815.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1814.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1810.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1803.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1790.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1779.9
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1770.2
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1767.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1755.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1754.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1701.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1699.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1697.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1682.8
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1660.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1659.0
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1654.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1654.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1653.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1633.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1629.8
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1614.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1561.0
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1555.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1503.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1464.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1448.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1380.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1352.5
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1331.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

321.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 321.2
FF:10204-103F6 68 years, female 321.2

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