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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

121.845
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:227.6 nTPM
HPA Brain:482.6 nTPM
GTEx:227.6 nTPM
FANTOM5:510.3 Scaled Tags Per Million
Pig:444.3 nTPM
Mouse:1040.3 nTPM
Allen mouse:23.8 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002858Antibody HPA079659Antibody CAB000076Antibody CAB055505
Glial cells Not detectedNot detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedLowLow








HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB078999
Hippocampal formation mean intensity 121.845
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 103.540
Molecular layer of the dentate gyrus 90.355
Granular dentate gyrus 70.664
CA1 - oriens layer 104.815
CA1 - pyramidal layer 67.576
CA1 - radiatum layer 103.119
CA2 - oriens layer 104.634
CA2 - pyramidal layer 84.633
CA2 - radiatum layer 110.104
CA3 - oriens layer 121.845
CA3 - pyramidal layer 88.283
CA3 - radiatum layer 114.302
Stratum lucidum 120.667
Lacunosum moleculare 71.072
Subiculum 73.155

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

482.6
Sample id Sample description nTPM
Hippocampus
nTPM: 296.0
1898 Male, age 80, left hemisphere 432.5
2621 Female, age 67, right hemisphere 396.9
1855 Male, age 76, left hemisphere 299.0
2148 Female, age 91, left hemisphere 258.7
1911 Female, age 85, right hemisphere 220.9
2529 Female, age 94, left hemisphere 167.9
Dentate gyrus
nTPM: 316.9
1927 Female, age 91, both hemispheres 466.5
2530 Female, age 94, left hemisphere 350.9
2010 Male, age 76, both hemispheres 336.2
2531 Female, age 67, both hemispheres 273.9
2246 Female, age 85, both hemispheres 260.7
2528 Male, age 74, both hemispheres 213.1
Entorhinal gyrus
nTPM: 354.1
2613 Female, age 94, left hemisphere 466.8
2764 Male, age 80, right hemisphere 451.4
1938 Female, age 85, left hemisphere 367.7
1787 Male, age 76, left hemisphere 354.8
2686 Male, age 75, right hemisphere 293.1
2117 Female, age 91, right hemisphere 190.8
Hippocampus, CA1
nTPM: 388.4
2749 Male, age 80, left hemisphere 757.4
1873 Female, age 85, both hemispheres 328.7
2045 Male, age 76, both hemispheres 311.6
2527 Male, age 74, both hemispheres 301.8
2082 Female, age 91, right hemisphere 242.3
Hippocampus, CA2
nTPM: 317.0
1892 Male, age 76, both hemispheres 475.2
1963 Male, age 80, left hemisphere 390.1
2437 Female, age 94, left hemisphere 298.8
1940 Female, age 85, left hemisphere 279.1
2113 Female, age 91, right hemisphere 231.7
2249 Male, age 74, both hemispheres 227.1
Hippocampus, CA3
nTPM: 341.2
2137 Male, age 80, left hemisphere 587.5
1867 Male, age 76, both hemispheres 354.9
2620 Female, age 94, left hemisphere 328.0
2861 Female, age 67, both hemispheres 308.0
2436 Male, age 74, both hemispheres 243.8
1891 Female, age 85, both hemispheres 224.7
Parahippocampal cortex
nTPM: 371.0
2245 Female, age 91, both hemispheres 484.8
1990 Female, age 91, right hemisphere 446.1
2250 Female, age 67, right hemisphere 442.2
1850 Male, age 80, both hemispheres 420.6
2693 Female, age 94, both hemispheres 371.4
1933 Female, age 85, both hemispheres 366.1
2532 Female, age 72, left hemisphere 350.5
2622 Female, age 67, right hemisphere 328.0
2018 Male, age 76, both hemispheres 254.9
2692 Male, age 74, both hemispheres 245.1
Perirhinal gyrus
nTPM: 482.6
1847 Female, age 91, left hemisphere 624.6
2521 Female, age 94, right hemisphere 560.6
1794 Male, age 80, right hemisphere 463.3
1841 Female, age 85, right hemisphere 394.8
2848 Male, age 76, right hemisphere 369.9
Subiculum
nTPM: 269.1
1901 Male, age 80, both hemispheres 380.3
1977 Female, age 85, both hemispheres 324.5
2619 Male, age 74, both hemispheres 254.6
2438 Female, age 94, left hemisphere 250.2
2042 Male, age 76, both hemispheres 244.0
2729 Female, age 91, right hemisphere 160.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

227.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 227.6
Samples: 197

Max nTPM: 710.2
Min nTPM: 11.6
Std nTPM: 169.7
Median nTPM: 194.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 710.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 688.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 683.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 650.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 638.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 637.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 618.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 601.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 571.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 551.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 541.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 534.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 531.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 521.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 517.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 512.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 502.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 495.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 493.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 481.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 477.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 476.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 469.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 464.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 444.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 443.3
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 439.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 436.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 435.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 432.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 432.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 429.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 417.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 414.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 411.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 403.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 401.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 395.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 390.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 384.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 380.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 380.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 372.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 357.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 354.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 354.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 341.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 337.6
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 333.7
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 324.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 320.0
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 316.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 315.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 310.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 308.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 306.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 304.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 303.9
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 303.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 289.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 289.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 288.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 277.6
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 276.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 273.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 271.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 268.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 267.4
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 261.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 258.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 258.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 255.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 247.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 244.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 244.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 244.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 243.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 240.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 233.0
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 230.9
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 228.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 228.2
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 227.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 226.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 225.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 225.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 222.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 219.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 217.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 213.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 206.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 204.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 204.6
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 204.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 203.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 201.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 198.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 198.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 194.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 194.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 185.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 184.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 181.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 180.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 168.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 168.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 167.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 165.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 164.2
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 163.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 162.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 158.3
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 158.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 158.1
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 156.5
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 155.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 152.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 151.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 150.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 149.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 148.7
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 146.6
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 145.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 138.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 136.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 136.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 136.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 132.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 125.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 121.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 119.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 116.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 113.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 111.9
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 108.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 99.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 99.0
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 98.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 98.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 97.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 90.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 88.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 88.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 88.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 86.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 84.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 83.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 82.8
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 82.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 81.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 79.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 75.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 74.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 74.0
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 70.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 70.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 63.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 62.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 61.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 59.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 59.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 56.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 55.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 55.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 55.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 51.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 49.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 48.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 47.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 47.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 46.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 45.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 43.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 43.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 43.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 41.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 41.1
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 40.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 40.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 39.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 37.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 36.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 35.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 34.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 34.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 34.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 32.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 32.1
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 31.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 29.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 28.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 28.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 28.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 25.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 25.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 17.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 11.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

510.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 510.3
FF:10169-103B7 60 years, female 789.3
FF:10153-102I9 76 years, female 231.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

444.3
Pig sample Sample description nTPM
Subiculum
nTPM: 364.8
Samples: 4

Max nTPM: 468.9
Min nTPM: 316.4
Sample A Female 468.9
Sample B Female 316.4
Sample C Male 351.0
Sample D Male 322.8
Dorsal hippocampus
nTPM: 357.1
Samples: 4

Max nTPM: 478.4
Min nTPM: 244.0
Sample A Female 478.4
Sample B Female 403.1
Sample C Male 303.0
Sample D Male 244.0
Entorhinal cortex
nTPM: 444.3
Samples: 4

Max nTPM: 515.9
Min nTPM: 404.2
Sample A Female 515.9
Sample B Female 413.3
Sample C Male 443.8
Sample D Male 404.2
Ventral hippocampus
nTPM: 369.4
Samples: 4

Max nTPM: 450.9
Min nTPM: 241.1
Sample A Female 425.6
Sample B Female 241.1
Sample C Male 450.9
Sample D Male 360.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1040.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1040.3
Samples: 4

Max nTPM: 1218.6
Min nTPM: 946.9
Sample A Male 946.9
Sample B Male 1015.5
Sample C Female 980.3
Sample D Female 1218.6
Hippocampal formation
nTPM: 984.5
Samples: 4

Max nTPM: 1078.4
Min nTPM: 913.6
Sample A Male 970.6
Sample B Male 975.5
Sample C Female 1078.4
Sample D Female 913.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

23.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 23.8
73584747 Antisense, RP_051206_01_A06, Mouse strain C57BL/6J (56 days, male) 23.8

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