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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

123.588
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:372.3 nTPM
FANTOM5:797.2 Scaled Tags Per Million
Pig:322.6 nTPM
Allen mouse:18.5 Expression energy

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB078999
Pons mean intensity 123.588
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 24.641
Parabrachial nucleus 81.679
Principle sensory trigeminal nucleus 46.249
Locus coeruleus 123.588
Pontine nucleus 64.842
Vestibular nucleus 60.718
Pontine reticular nucleus, oral 19.487
Lateral lemniscus 21.485
Superior paraolivary nucleus 31.884

PONS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

372.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 169.5
2301 Female, age 85, both hemispheres 195.0
1984 Male, age 76, both hemispheres 190.6
2188 Female, age 91, both hemispheres 154.8
2090 Male, age 80, both hemispheres 137.5
Dorsal cochlear nucleus
nTPM: 153.5
2187 Female, age 91, both hemispheres 202.3
2058 Male, age 76, both hemispheres 177.1
2370 Male, age 61, both hemispheres 151.1
2802 Male, age 74, right hemisphere 128.3
2378 Male, age 80, both hemispheres 108.8
Dorsal tegmental nucleus
nTPM: 158.5
2083 Male, age 80, both hemispheres 194.9
1936 Male, age 76, left hemisphere 155.9
2358 Male, age 61, both hemispheres 155.6
2326 Male, age 74, both hemispheres 127.4
Dorsolateral tegmental area
nTPM: 159.0
2141 Male, age 76, both hemispheres 217.5
2751 Female, age 85, both hemispheres 208.5
2654 Male, age 80, both hemispheres 185.1
2360 Male, age 74, both hemispheres 111.8
2337 Male, age 61, both hemispheres 72.3
Kolliker-Fuse nucleus
nTPM: 185.0
2163 Male, age 80, both hemispheres 217.5
2793 Female, age 91, left hemisphere 195.2
2315 Male, age 76, right hemisphere 142.2
Lateral lemniscal nuclei
nTPM: 290.5
2169 Male, age 76, both hemispheres 366.0
2453 Male, age 74, right hemisphere 327.6
2746 Female, age 85, left hemisphere 295.6
2036 Male, age 80, both hemispheres 294.6
2320 Female, age 91, left hemisphere 168.9
Lateral parabrachial nucleus
nTPM: 203.9
2139 Female, age 85, right hemisphere 328.6
2790 Male, age 61, both hemispheres 199.8
2013 Male, age 80, both hemispheres 199.2
2792 Male, age 76, both hemispheres 87.8
Lateral vestibular nucleus
nTPM: 190.5
2184 Male, age 76, both hemispheres 204.5
2311 Male, age 80, both hemispheres 176.4
Locus coeruleus
nTPM: 274.9
2123 Female, age 91, both hemispheres 428.1
2720 Male, age 74, both hemispheres 349.8
2162 Male, age 80, both hemispheres 241.9
1980 Male, age 76, both hemispheres 239.4
2014 Male, age 55, unknown 234.7
2788 Male, age 74, unknown 226.2
2317 Female, age 72, unknown 204.4
Medial parabrachial nucleus
nTPM: 216.0
2854 Male, age 80, both hemispheres 262.0
2170 Female, age 91, both hemispheres 249.6
2156 Male, age 61, both hemispheres 199.1
2786 Male, age 76, both hemispheres 185.6
2463 Female, age 85, right hemisphere 183.9
Medial periolivary nuclei
nTPM: 273.7
2171 Female, age 85, both hemispheres 428.6
2063 Male, age 76, both hemispheres 380.0
2791 Male, age 74, right hemisphere 239.0
2081 Male, age 80, both hemispheres 163.4
2458 Female, age 91, both hemispheres 157.5
Motor facial nucleus
nTPM: 291.0
2062 Male, age 76, both hemispheres 402.6
2365 Male, age 74, right hemisphere 319.5
2697 Female, age 85, both hemispheres 314.3
2327 Male, age 80, both hemispheres 297.3
2126 Male, age 61, both hemispheres 227.3
2795 Female, age 91, both hemispheres 184.8
Motor trigeminal nucleus
nTPM: 214.1
2079 Male, age 80, both hemispheres 268.9
2335 Male, age 61, both hemispheres 227.2
2560 Male, age 74, both hemispheres 217.8
2309 Male, age 76, both hemispheres 191.2
2321 Female, age 91, both hemispheres 165.6
Nuclei of the trapezoid body
nTPM: 340.8
2159 Male, age 61, both hemispheres 521.5
2735 Female, age 85, both hemispheres 434.0
1983 Male, age 76, both hemispheres 350.5
2166 Male, age 80, both hemispheres 233.2
2368 Female, age 91, both hemispheres 164.7
Nucleus raphe magnus
nTPM: 372.3
2160 Male, age 61, both hemispheres 667.4
2172 Female, age 85, both hemispheres 490.5
2455 Male, age 74, both hemispheres 382.2
2328 Male, age 80, both hemispheres 269.4
2051 Male, age 76, both hemispheres 245.3
2459 Female, age 91, both hemispheres 179.2
Paramedian reticular nucleus
nTPM: 236.6
2050 Female, age 85, both hemispheres 348.3
2313 Male, age 61, both hemispheres 246.3
2057 Male, age 80, both hemispheres 215.9
2052 Male, age 76, both hemispheres 136.0
Pedunculopontine tegmental nucleus
nTPM: 199.3
1921 Female, age 85, both hemispheres 225.2
2334 Male, age 80, both hemispheres 194.4
2338 Male, age 61, both hemispheres 178.1
Pontine nuclei
nTPM: 328.1
2727 Male, age 61, right hemisphere 522.4
2787 Female, age 85, both hemispheres 517.0
1863 Male, age 55, unknown 373.2
1968 Male, age 76, left hemisphere 325.7
2109 Female, age 72, unknown 323.9
2454 Male, age 74, left hemisphere 226.7
2115 Male, age 80, left hemisphere 186.9
2319 Female, age 91, both hemispheres 149.3
Pontine raphe nucleus
nTPM: 300.6
2122 Female, age 85, midline 350.1
2853 Male, age 76, midline 251.1
Posteroventral cochlear nucleus
nTPM: 153.0
2752 Female, age 85, both hemispheres 275.8
2070 Male, age 76, both hemispheres 224.0
2371 Male, age 61, both hemispheres 123.3
2341 Male, age 80, both hemispheres 100.4
2135 Female, age 91, both hemispheres 41.7
Principal sensory trigeminal nucleus
nTPM: 298.1
2158 Male, age 61, both hemispheres 547.9
2008 Male, age 80, left hemisphere 295.7
2324 Male, age 76, both hemispheres 184.5
2367 Female, age 91, left hemisphere 164.2
Reticular pontine nucleus, caudal
nTPM: 228.5
2332 Male, age 80, right hemisphere 330.4
2092 Male, age 76, both hemispheres 270.2
2457 Female, age 91, both hemispheres 165.1
2559 Male, age 74, both hemispheres 148.2
Reticular pontine nucleus, oral
nTPM: 227.4
2361 Male, age 74, both hemispheres 297.3
2012 Female, age 85, both hemispheres 284.7
2167 Male, age 76, both hemispheres 202.7
1939 Male, age 80, both hemispheres 201.9
2366 Female, age 91, both hemispheres 150.5
Reticulotegmental nucleus
nTPM: 218.3
2325 Male, age 76, both hemispheres 284.8
2333 Male, age 80, both hemispheres 199.8
2452 Male, age 74, both hemispheres 195.6
2322 Female, age 91, both hemispheres 193.2
Spinal trigeminal nucleus, oral
nTPM: 213.0
2737 Female, age 85, both hemispheres 236.7
2164 Male, age 80, both hemispheres 210.1
1978 Male, age 76, both hemispheres 192.0
Subcoeruleus area
nTPM: 233.4
2323 Female, age 91, left hemisphere 342.5
1958 Male, age 80, both hemispheres 264.8
2089 Male, age 76, left hemisphere 255.4
2369 Female, age 85, left hemisphere 164.0
2451 Male, age 74, both hemispheres 140.2
Superior olive
nTPM: 271.8
1875 Female, age 85, both hemispheres 397.5
2364 Male, age 74, right hemisphere 266.1
2329 Male, age 80, right hemisphere 247.3
2020 Male, age 76, both hemispheres 244.6
2561 Female, age 91, both hemispheres 203.5
Ventral periolivary nuclei
nTPM: 297.3
2130 Female, age 85, both hemispheres 374.4
2165 Male, age 80, both hemispheres 357.1
2794 Female, age 91, left hemisphere 232.9
2023 Male, age 76, both hemispheres 225.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 235.9
2449 Male, age 74, both hemispheres 347.3
2840 Female, age 85, both hemispheres 271.1
1959 Male, age 76, both hemispheres 267.2
2161 Male, age 80, both hemispheres 221.0
2359 Male, age 61, both hemispheres 180.7
2456 Female, age 91, both hemispheres 128.2

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

797.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 277.2
FF:10182-103D2 60 years, female 331.9
FF:10165-103B3 76 years, female 222.5
Pons
Scaled Tags Per Million: 797.2
FF:10033-101E6 18-54 years, mixed 797.2

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

322.6
Pig sample Sample description nTPM
Pons
nTPM: 322.6
Samples: 4

Max nTPM: 584.7
Min nTPM: 199.6
Sample A Female 584.7
Sample B Female 231.5
Sample C Male 199.6
Sample D Male 274.6

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.5
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 18.5
73584747 Antisense, RP_051206_01_A06, Mouse strain C57BL/6J (56 days, male) 18.5

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