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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:301.1 nTPM
GTEx:301.1 nTPM
FANTOM5:204.1 Scaled Tags Per Million
Pig:341.5 nTPM
Mouse:1047.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

301.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 301.1
Samples: 105

Max nTPM: 468.6
Min nTPM: 82.7
Std nTPM: 78.1
Median nTPM:
163_1 78 years, male 468.6
377_1 82 years, female 448.8
352_1 62 years, male 423.5
425_1 59 years, female 421.7
316_1 62 years, male 420.5
319_1 81 years, male 414.3
229_1 69 years, female 413.4
376_1 75 years, female 402.3
386_1 76 years, male 397.7
335_1 73 years, female 395.0
246_1 77 years, male 394.3
218_1 71 years, female 394.0
177_1 74 years, male 393.1
237_1 82 years, male 388.4
322_1 76 years, male 388.4
243_1 75 years, male 381.6
251_1 78 years, male 378.8
172_1 72 years, female 377.9
406_1 79 years, male 377.3
321_1 62 years, female 374.8
286_1 68 years, female 373.6
320_1 89 years, female 372.5
217_1 76 years, male 371.5
350_1 84 years, female 368.0
292_1 71 years, male 366.1
6_1 73 years, female 363.0
293_1 68 years, female 362.7
379_1 60 years, male 360.8
354_1 81 years, female 360.7
503_1 68 years, male 360.3
375_1 74 years, female 358.0
189_1 76 years, male 354.3
389_1 86 years, female 350.6
318_1 68 years, male 346.6
526_1 61 years, male 341.8
518_1 75 years, female 341.0
405_1 91 years, male 339.2
394_1 75 years, female 337.6
353_1 82 years, female 336.1
265_1 87 years, male 330.9
266_1 85 years, male 329.7
447_1 81 years, male 327.5
468_1 89 years, male 324.9
517_1 88 years, male 324.8
404_1 82 years, female 324.2
254_1 77 years, female 323.5
480_1 63 years, male 320.5
355_1 70 years, female 318.7
349_1 83 years, male 318.1
153_1 70 years, female 313.7
356_1 87 years, female 309.4
506_1 65 years, male 309.1
264_1 73 years, female 307.9
351_1 91 years, male 303.2
17_1 71 years, male 301.2
2_1 77 years, female 299.4
291_1 76 years, male 299.0
396_1 62 years, male 297.2
347_1 72 years, male 293.0
35_1 74 years, female 290.0
499_1 55 years, female 289.9
313_1 79 years, female 289.0
384_1 83 years, male 288.3
115_1 83 years, male 283.5
348_1 84 years, male 282.1
18_1 88 years, male 279.1
324_1 76 years, male 277.9
295_1 61 years, female 277.7
9_1 66 years, female 276.2
452_1 88 years, female 276.0
4_1 88 years, female 275.5
126_1 63 years, male 269.7
137_1 83 years, male 268.9
145_1 84 years, male 264.7
288_1 66 years, female 258.7
173_1 67 years, male 257.0
311_1 78 years, male 256.3
315_1 62 years, female 255.2
314_1 67 years, male 245.0
109_1 81 years, female 244.9
317_1 60 years, male 239.0
120_1 70 years, female 234.9
43_1 64 years, female 232.5
142_1 61 years, female 227.1
415_1 77 years, female 227.1
307_1 66 years, female 224.1
117_1 61 years, male 222.3
99_1 64 years, male 219.9
139_1 64 years, female 218.5
162_1 79 years, female 215.6
466_1 57 years, female 214.8
414_1 84 years, female 210.5
41_1 94 years, female 209.7
81_1 67 years, male 209.1
42_1 85 years, male 199.9
32_1 67 years, male 197.4
501_1 88 years, male 190.1
495_1 57 years, female 175.2
149_1 88 years, male 159.7
89_1 63 years, male 156.8
413_1 59 years, female 156.2
119_1 70 years, female 150.5
308_1 70 years, female 130.7
490_1 67 years, female 111.2
491_1 89 years, female 82.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

204.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 204.1
FF:10030-101E3 24-65 years, mixed 204.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

341.5
Pig sample Sample description nTPM
Retina
nTPM: 341.5
Samples: 4

Max nTPM: 373.9
Min nTPM: 306.1
Sample A Female 336.9
Sample B Female 349.2
Sample C Male 373.9
Sample D Male 306.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1047.3
Mouse sample Sample description nTPM
Retina
nTPM: 1047.4
Samples: 4

Max nTPM: 1167.3
Min nTPM: 902.1
Sample A Male 1058.2
Sample B Male 1061.8
Sample C Female 1167.3
Sample D Female 902.1

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