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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:355.2 nTPM
HPA Brain:138.4 nTPM
GTEx:355.2 nTPM
FANTOM5:61.3 Scaled Tags Per Million
Pig:96.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 119.4
2565 Male, age 75, midline 149.2
2194 Female, age 79, both hemispheres 121.4
2816 Male, age 47, midline 116.5
1981 Female, age 72, midline 111.0
2048 Male, age 55, midline 99.0
Cervical spinal cord, dorsal horn
nTPM: 102.3
2296 Male, age 66, both hemispheres 114.7
1877 Male, age 55, unknown 109.2
2173 Female, age 72, unknown 108.5
2069 Male, age 47, both hemispheres 100.2
2297 Male, age 75, both hemispheres 91.4
2721 Male, age 90, both hemispheres 89.6
Cervical spinal cord, ventral horn
nTPM: 138.4
2809 Male, age 90, both hemispheres 173.2
2480 Male, age 75, both hemispheres 159.0
2068 Male, age 55, unknown 128.1
2820 Female, age 79, both hemispheres 128.0
2098 Female, age 72, unknown 124.0
2295 Male, age 66, both hemispheres 118.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

355.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 355.2
Samples: 159

Max nTPM: 706.8
Min nTPM: 141.8
Std nTPM: 103.0
Median nTPM: 336.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 706.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 654.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 639.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 613.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 610.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 593.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 592.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 561.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 552.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 533.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 508.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 502.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 494.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 492.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 492.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 486.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 483.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 482.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 480.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 479.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 477.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 467.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 466.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 460.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 453.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 449.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 448.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 445.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 438.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 438.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 434.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 432.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 431.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 430.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 425.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 424.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 417.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 417.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 417.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 416.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 412.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 411.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 411.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 410.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 410.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 404.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 403.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 400.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 400.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 398.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 395.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 391.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 390.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 388.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 384.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 384.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 379.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 376.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 375.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 370.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 369.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 369.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 365.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 365.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 364.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 360.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 359.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 353.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 353.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 351.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 349.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 348.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 346.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 344.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 341.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 341.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 339.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 337.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 337.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 336.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 336.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 336.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 335.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 332.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 330.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 329.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 328.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 328.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 328.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 328.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 327.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 326.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 326.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 321.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 320.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 315.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 314.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 313.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 312.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 311.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 309.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 309.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 309.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 309.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 303.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 303.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 301.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 301.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 301.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 301.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 300.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 299.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 298.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 298.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 294.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 293.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 291.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 290.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 288.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 288.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 288.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 284.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 281.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 281.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 280.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 277.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 277.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 267.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 262.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 261.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 258.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 256.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 254.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 253.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 250.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 250.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 249.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 249.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 248.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 248.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 247.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 246.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 238.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 237.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 237.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 236.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 235.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 234.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 234.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 227.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 226.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 211.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 205.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 193.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 180.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 176.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 154.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 149.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 141.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

61.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 61.3
FF:10159-103A6 76 years, female 63.1
FF:10181-103D1 60 years, female 59.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 96.3
Samples: 4

Max nTPM: 157.1
Min nTPM: 61.8
Sample A Female 61.8
Sample B Female 96.4
Sample C Male 157.1
Sample D Male 70.0
Ventral spinal cord
nTPM: 90.4
Samples: 4

Max nTPM: 117.4
Min nTPM: 69.3
Sample A Female 69.3
Sample B Female 90.8
Sample C Male 117.4
Sample D Male 84.2

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