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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:490.1 nTPM
GTEx:490.1 nTPM
FANTOM5:333.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA045101
Squamous epithelial cells High



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

490.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 490.1
Samples: 156

Max nTPM: 1362.7
Min nTPM: 274.1
Std nTPM: 133.5
Median nTPM: 464.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 1362.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 1033.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 934.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 831.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 743.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 713.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 712.3
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 708.1
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 695.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 693.8
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 659.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 657.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 652.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 650.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 650.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 649.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 628.6
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 619.1
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 617.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 609.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 606.6
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 604.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 600.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 597.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 595.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 582.4
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 582.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 579.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 576.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 569.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 568.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 565.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 564.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 553.1
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 552.9
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 542.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 541.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 540.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 539.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 538.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 533.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 527.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 527.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 522.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 521.5
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 519.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 515.8
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 515.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 512.0
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 511.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 505.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 504.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 503.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 503.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 501.4
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 500.6
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 498.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 495.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 495.5
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 494.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 488.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 488.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 487.0
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 486.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 483.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 483.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 480.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 475.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 475.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 474.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 473.7
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 473.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 472.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 472.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 468.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 467.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 467.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 465.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 464.0
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 463.5
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 457.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 457.3
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 456.9
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 456.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 456.2
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 453.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 453.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 453.7
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 453.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 451.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 451.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 450.8
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 450.4
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 445.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 444.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 442.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 440.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 435.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 433.7
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 432.0
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 430.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 429.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 425.3
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 424.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 424.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 424.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 424.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 422.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 422.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 421.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 415.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 414.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 412.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 411.9
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 411.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 410.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 408.2
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 408.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 408.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 403.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 401.1
GTEX-11I78-2026-SM-5987C 50-59 years, female 398.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 392.0
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 391.4
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 391.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 390.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 390.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 389.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 389.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 388.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 387.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 386.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 385.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 384.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 384.2
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 383.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 380.9
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 380.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 379.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 378.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 377.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 370.7
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 370.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 369.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 364.5
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 360.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 360.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 351.1
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 347.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 343.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 339.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 339.1
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 310.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 278.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 274.8
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 274.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

333.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 333.2
FF:10204-103F6 68 years, female 333.2

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