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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:151.5 nTPM
HPA Brain:289.6 nTPM
GTEx:151.5 nTPM
FANTOM5:423.7 Scaled Tags Per Million
Pig:181.5 nTPM
Mouse:311.6 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

289.6
Sample id Sample description nTPM
Amygdala
nTPM: 232.5
2814 Male, age 76, right hemisphere 256.2
2517 Female, age 94, left hemisphere 242.3
1987 Female, age 91, left hemisphere 232.5
2514 Male, age 75, right hemisphere 224.1
2695 Female, age 67, right hemisphere 207.3
Basal amygdala
nTPM: 274.2
2243 Female, age 91, right hemisphere 336.5
2685 Female, age 94, left hemisphere 320.8
2609 Male, age 75, right hemisphere 265.3
1955 Male, age 76, both hemispheres 262.4
2110 Male, age 80, left hemisphere 254.1
2827 Female, age 67, right hemisphere 205.9
Central amygdala
nTPM: 289.6
2826 Female, age 94, left hemisphere 347.7
2239 Male, age 80, left hemisphere 305.3
2701 Female, age 91, right hemisphere 302.7
2515 Male, age 75, right hemisphere 253.0
1905 Male, age 76, both hemispheres 239.4
Corticomedial amygdala
nTPM: 268.5
2242 Female, age 91, right hemisphere 324.7
2829 Male, age 80, left hemisphere 304.3
2240 Male, age 76, both hemispheres 275.8
2535 Female, age 67, right hemisphere 251.2
2429 Female, age 94, left hemisphere 238.8
2428 Male, age 75, right hemisphere 216.3
Lateral amygdala
nTPM: 241.6
2534 Female, age 94, left hemisphere 356.8
1883 Male, age 76, both hemispheres 255.9
2255 Female, age 91, right hemisphere 244.2
2256 Male, age 80, left hemisphere 226.3
2516 Male, age 75, right hemisphere 217.4
2830 Female, age 67, right hemisphere 148.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 151.5
Samples: 152

Max nTPM: 310.7
Min nTPM: 33.2
Std nTPM: 49.7
Median nTPM: 144.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 310.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 280.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 271.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 259.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 258.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 251.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 244.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 242.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 241.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 239.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 238.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 227.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 226.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 224.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 218.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 214.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 212.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 208.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 208.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 207.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 206.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 206.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 204.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 202.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 201.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 201.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 198.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 196.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 195.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 193.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 192.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 190.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 190.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 187.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 187.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 185.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 184.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 182.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 181.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 181.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 180.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 180.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 179.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 177.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 172.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 171.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 171.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 169.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 167.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 166.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 164.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 164.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 164.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 163.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 163.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 163.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 163.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 162.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 162.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 161.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 159.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 159.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 157.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 157.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 157.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 156.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 155.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 155.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 151.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 151.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 151.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 150.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 149.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 147.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 146.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 144.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 143.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 142.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 142.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 142.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 142.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 142.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 142.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 141.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 141.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 140.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 139.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 139.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 137.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 137.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 136.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 136.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 135.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 135.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 135.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 134.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 133.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 132.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 131.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 130.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 130.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 129.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 129.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 128.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 127.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 126.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 125.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 125.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 124.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 123.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 122.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 121.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 121.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 120.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 116.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 115.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 114.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 111.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 110.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 108.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 108.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 107.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 106.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 104.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 103.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 103.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 103.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 101.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 101.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 98.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 98.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 96.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 96.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 95.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 93.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 93.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 92.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 90.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 89.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 88.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 88.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 86.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 83.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 80.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 80.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 79.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 78.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 68.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 62.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 54.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 35.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 33.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

423.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 423.7
FF:10151-102I7 76 years, female 423.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.5
Pig sample Sample description nTPM
Amygdala
nTPM: 181.5
Samples: 4

Max nTPM: 256.3
Min nTPM: 143.8
Sample A Female 256.3
Sample B Female 143.8
Sample C Male 159.4
Sample D Male 166.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

311.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 311.6
Samples: 4

Max nTPM: 337.3
Min nTPM: 286.7
Sample A Male 321.1
Sample B Male 286.7
Sample C Female 337.3
Sample D Female 301.2

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