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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:253.6 nTPM
FANTOM5:187.9 Scaled Tags Per Million
Pig:237.6 nTPM
Mouse:286.0 nTPM

THALAMUS - Annotated protein expression
Pending normal tissue analysis

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

253.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 186.2
2032 Female, age 42, unknown 201.6
2497 Male, age 66, unknown 198.9
2396 Male, age 61, right hemisphere 158.2
Centromedial thalamic nucleus
nTPM: 182.6
2401 Male, age 76, right hemisphere 231.9
2279 Female, age 85, left hemisphere 133.2
Habenula
nTPM: 253.6
1957 Male, age 80, both hemispheres 312.5
2203 Male, age 61, left hemisphere 280.2
2276 Male, age 66, unknown 230.9
2252 Male, age 62, unknown 190.6
Lateral geniculate body
nTPM: 226.9
2399 Male, age 61, left hemisphere 271.3
2106 Female, age 67, right hemisphere 264.9
1953 Male, age 62, unknown 263.1
2035 Female, age 72, unknown 246.4
2659 Male, age 66, unknown 220.9
2857 Male, age 74, right hemisphere 212.6
2575 Female, age 94, right hemisphere 171.8
2841 Male, age 80, both hemispheres 163.8
Lateral thalamic nuclei
nTPM: 226.9
1903 Male, age 76, left hemisphere 268.3
2577 Male, age 74, both hemispheres 241.4
2573 Female, age 94, left hemisphere 224.0
2765 Female, age 67, both hemispheres 205.4
2661 Female, age 72, unknown 195.2
Medial dorsal thalamic nucleus
nTPM: 251.8
2492 Male, age 75, right hemisphere 304.3
2498 Male, age 66, unknown 304.2
1859 Male, age 76, both hemispheres 276.0
2026 Male, age 62, unknown 263.4
1810 Male, age 48, unknown 257.3
2039 Female, age 72, unknown 256.9
1971 Male, age 61, right hemisphere 250.3
2283 Male, age 80, right hemisphere 249.1
2572 Female, age 94, right hemisphere 247.2
2576 Male, age 74, both hemispheres 241.0
1930 Female, age 42, unknown 213.4
2660 Female, age 72, unknown 208.1
2402 Female, age 67, both hemispheres 202.8
Medial geniculate body
nTPM: 234.8
2571 Male, age 75, right hemisphere 285.7
1811 Female, age 42, unknown 274.7
2650 Female, age 94, left hemisphere 240.3
2207 Male, age 80, right hemisphere 236.3
2217 Female, age 72, unknown 220.4
2657 Male, age 74, right hemisphere 204.9
2049 Male, age 76, both hemispheres 181.6
Nucleus reuniens
nTPM: 225.9
2212 Female, age 67, left hemisphere 300.8
2205 Male, age 80, left hemisphere 228.7
2210 Female, age 85, left hemisphere 148.3
Nucleus rhomboideus
nTPM: 190.7
2206 Male, age 80, both hemispheres 283.1
2213 Female, age 67, left hemisphere 154.6
2280 Female, age 85, left hemisphere 134.6
Posterior thalamic nucleus
nTPM: 225.8
2649 Female, age 94, both hemispheres 248.7
2495 Female, age 67, right hemisphere 225.8
2266 Male, age 76, right hemisphere 217.8
2655 Male, age 74, right hemisphere 210.9
Pulvinar
nTPM: 238.4
2582 Female, age 72, unknown 269.7
2398 Male, age 61, left hemisphere 266.9
1972 Male, age 62, unknown 265.6
2724 Male, age 74, right hemisphere 248.2
1929 Male, age 48, unknown 244.4
2214 Male, age 76, right hemisphere 235.9
1932 Male, age 80, right hemisphere 231.9
2496 Female, age 67, right hemisphere 228.0
1899 Female, age 42, unknown 206.5
2499 Male, age 66, unknown 187.2
Subthalamic nucleus
nTPM: 232.5
2406 Female, age 72, unknown 338.4
2282 Male, age 61, both hemispheres 248.5
2124 Male, age 62, unknown 239.4
2779 Female, age 42, unknown 235.8
2275 Male, age 66, unknown 223.9
2658 Male, age 74, both hemispheres 212.5
2216 Male, age 48, unknown 191.3
2056 Female, age 72, unknown 169.8
Ventral posterolateral thalamic nucleus
nTPM: 237.5
2570 Male, age 75, right hemisphere 297.5
2397 Male, age 61, right hemisphere 251.4
2578 Male, age 74, both hemispheres 243.3
2197 Male, age 80, both hemispheres 234.2
2740 Male, age 76, right hemisphere 227.5
2581 Female, age 72, unknown 170.8
Ventral posteromedial thalamic nucleus
nTPM: 241.0
2202 Male, age 61, left hemisphere 261.2
2653 Male, age 74, both hemispheres 254.9
2281 Male, age 75, right hemisphere 233.7
2758 Male, age 80, both hemispheres 233.2
2127 Male, age 76, right hemisphere 222.0
Ventral thalamic nuclei
nTPM: 226.1
1860 Male, age 76, both hemispheres 256.9
1845 Male, age 48, unknown 252.6
1912 Female, age 42, unknown 242.1
2204 Male, age 80, both hemispheres 240.4
2652 Male, age 74, left hemisphere 227.1
2285 Male, age 62, unknown 224.7
2580 Male, age 66, unknown 205.9
2291 Female, age 72, unknown 198.3
2858 Female, age 72, unknown 186.5
Zona incerta
nTPM: 206.2
2208 Male, age 80, right hemisphere 245.0
2663 Female, age 72, unknown 231.2
2215 Male, age 66, unknown 214.9
2403 Male, age 62, unknown 181.7
2822 Male, age 74, right hemisphere 158.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

187.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 187.9
FF:10154-103A1 76 years, female 187.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.6
Pig sample Sample description nTPM
Thalamus
nTPM: 237.6
Samples: 4

Max nTPM: 298.3
Min nTPM: 198.1
Sample A Female 298.3
Sample B Female 232.5
Sample C Male 221.5
Sample D Male 198.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

286.0
Mouse sample Sample description nTPM
Thalamus
nTPM: 286.0
Samples: 4

Max nTPM: 299.8
Min nTPM: 272.6
Sample A Male 272.6
Sample B Male 290.8
Sample C Female 280.8
Sample D Female 299.8

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