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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1417.3 nTPM
HPA Brain:568.9 nTPM
GTEx:1417.3 nTPM
FANTOM5:19.4 Scaled Tags Per Million
Pig:499.5 nTPM
Mouse:515.0 nTPM
Allen mouse:5.9 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

568.9
Sample id Sample description nTPM
Amygdala
nTPM: 532.5
2695 Female, age 67, right hemisphere 661.3
2514 Male, age 75, right hemisphere 559.1
2517 Female, age 94, left hemisphere 532.8
1987 Female, age 91, left hemisphere 484.2
2814 Male, age 76, right hemisphere 425.2
Basal amygdala
nTPM: 501.4
2827 Female, age 67, right hemisphere 737.9
2609 Male, age 75, right hemisphere 572.1
2110 Male, age 80, left hemisphere 472.2
2685 Female, age 94, left hemisphere 453.8
2243 Female, age 91, right hemisphere 389.5
1955 Male, age 76, both hemispheres 382.7
Central amygdala
nTPM: 541.1
2826 Female, age 94, left hemisphere 924.5
2515 Male, age 75, right hemisphere 620.6
2239 Male, age 80, left hemisphere 417.4
1905 Male, age 76, both hemispheres 391.3
2701 Female, age 91, right hemisphere 351.7
Corticomedial amygdala
nTPM: 453.3
2428 Male, age 75, right hemisphere 624.7
2535 Female, age 67, right hemisphere 550.0
2829 Male, age 80, left hemisphere 445.8
2242 Female, age 91, right hemisphere 401.2
2429 Female, age 94, left hemisphere 373.2
2240 Male, age 76, both hemispheres 324.9
Lateral amygdala
nTPM: 568.9
2830 Female, age 67, right hemisphere 882.0
2534 Female, age 94, left hemisphere 625.9
2516 Male, age 75, right hemisphere 608.6
2256 Male, age 80, left hemisphere 499.5
2255 Female, age 91, right hemisphere 420.8
1883 Male, age 76, both hemispheres 376.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1417.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1417.3
Samples: 152

Max nTPM: 4150.2
Min nTPM: 510.4
Std nTPM: 628.1
Median nTPM: 1283.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4150.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3489.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3319.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3250.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3242.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3084.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3023.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2972.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2497.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2448.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2346.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2344.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2326.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2314.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2268.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2257.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2256.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2227.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2182.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2117.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2023.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2007.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1996.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1961.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1881.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1830.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1819.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1810.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1805.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1766.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1722.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1712.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1709.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1686.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1676.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1676.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1655.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1635.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1631.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1630.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1598.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1587.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1576.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1573.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1565.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1551.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1541.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1531.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1519.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1514.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1508.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1505.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1435.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1430.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1414.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1412.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1395.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1395.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1393.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1383.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1367.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1367.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1365.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1358.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1357.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1346.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1327.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1326.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1324.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1319.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1319.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1317.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1290.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1288.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1288.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1287.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1279.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1272.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1268.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1267.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1245.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1245.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1218.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1216.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1210.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1205.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1193.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1189.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1181.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1175.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1173.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1167.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1159.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1155.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1154.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1150.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1149.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1148.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1140.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1133.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1131.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1122.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1119.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1105.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1096.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1084.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1080.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1050.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1038.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1033.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1026.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1026.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1006.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1005.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1001.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 987.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 981.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 966.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 962.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 955.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 949.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 947.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 928.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 894.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 883.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 881.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 870.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 868.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 855.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 849.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 843.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 834.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 827.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 819.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 818.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 815.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 803.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 778.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 772.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 771.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 758.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 750.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 746.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 726.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 709.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 691.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 686.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 659.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 632.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 631.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 579.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 510.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 19.4
FF:10151-102I7 76 years, female 19.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

499.5
Pig sample Sample description nTPM
Amygdala
nTPM: 499.5
Samples: 4

Max nTPM: 637.7
Min nTPM: 281.2
Sample A Female 625.3
Sample B Female 637.7
Sample C Male 453.8
Sample D Male 281.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

515.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 515.0
Samples: 4

Max nTPM: 557.2
Min nTPM: 470.3
Sample A Male 470.3
Sample B Male 557.2
Sample C Female 544.0
Sample D Female 488.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.9
68633443 Antisense, RP_050125_02_H03, Mouse strain C57BL/6J (56 days, male) 6.5
72081492 Antisense, RP_051017_01_C08, Mouse strain C57BL/6J (56 days, male) 5.3

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