MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1305.4 nTPM
HPA Brain:539.9 nTPM
GTEx:1305.4 nTPM
FANTOM5:27.6 Scaled Tags Per Million
Pig:669.2 nTPM
Mouse:348.2 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 539.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 490.2
2586 Male, age 75, left hemisphere 666.7
2828 Female, age 72, unknown 568.4
2666 Male, age 74, left hemisphere 565.2
2411 Female, age 72, unknown 495.2
1830 Male, age 51, unknown 467.3
1870 Female, age 42, unknown 465.9
1827 Male, age 72, unknown 461.5
1833 Male, age 53, unknown 459.6
2019 Male, age 18, unknown 420.8
2219 Male, age 76, both hemispheres 331.9
Dorsal raphe nucleus
nTPM: 478.6
2016 Female, age 72, unknown 520.7
2298 Female, age 72, unknown 491.7
2750 Male, age 76, both hemispheres 462.2
2047 Male, age 72, unknown 460.5
1828 Male, age 53, unknown 458.2
Inferior colliculus
nTPM: 414.6
1890 Male, age 53, unknown 446.1
2097 Female, age 72, unknown 422.7
1848 Female, age 42, unknown 410.0
2849 Male, age 72, unknown 379.6
Median raphe nucleus
nTPM: 406.0
2220 Male, age 76, midline 406.0
Periaquaductal grey, anterior
nTPM: 470.5
2502 Female, age 75, unknown 535.2
1795 Male, age 51, unknown 454.3
1947 Male, age 18, unknown 422.1
Periaquaductal grey, dorsal
nTPM: 445.4
1831 Male, age 72, unknown 478.6
1840 Male, age 53, unknown 468.2
2464 Female, age 72, unknown 431.3
2850 Male, age 76, both hemispheres 403.6
Periaquaductal grey, lateral
nTPM: 455.1
2053 Male, age 18, unknown 553.4
2140 Male, age 76, both hemispheres 433.1
2272 Male, age 74, both hemispheres 378.8
Pretectal area
nTPM: 437.4
2316 Male, age 76, right hemisphere 532.6
2407 Male, age 75, both hemispheres 487.5
2825 Male, age 18, unknown 448.4
1817 Female, age 42, unknown 444.4
1815 Male, age 53, unknown 443.1
2007 Male, age 72, unknown 441.7
2224 Female, age 72, unknown 435.9
1944 Female, age 72, unknown 411.3
2273 Male, age 74, both hemispheres 397.8
1816 Male, age 51, unknown 395.9
2667 Female, age 75, unknown 373.1
Red nucleus
nTPM: 517.0
2503 Female, age 72, unknown 635.0
2584 Male, age 75, left hemisphere 613.7
1865 Male, age 51, unknown 559.4
2769 Male, age 72, unknown 548.6
2227 Male, age 72, unknown 526.7
1821 Female, age 72, unknown 521.0
1904 Male, age 53, unknown 508.4
2725 Female, age 75, unknown 508.4
2588 Male, age 74, left hemisphere 494.0
2785 Male, age 18, unknown 471.0
1954 Female, age 42, unknown 434.8
2823 Male, age 76, right hemisphere 383.2
Substantia nigra
nTPM: 539.9
1851 Male, age 51, unknown 674.5
2699 Male, age 18, unknown 663.6
2665 Male, age 74, both hemispheres 626.6
1916 Female, age 42, unknown 577.8
2590 Female, age 75, unknown 544.2
2583 Male, age 75, right hemisphere 537.3
2409 Female, age 72, unknown 514.1
2241 Male, age 72, unknown 448.4
1941 Male, age 53, unknown 411.6
1889 Female, age 72, unknown 400.4
Superior colliculus
nTPM: 497.0
2664 Male, age 75, both hemispheres 599.1
1995 Male, age 72, unknown 573.4
2587 Male, age 74, left hemisphere 569.7
1913 Female, age 42, unknown 556.1
1796 Male, age 53, unknown 504.3
2668 Female, age 75, unknown 493.7
2087 Female, age 72, unknown 448.8
1839 Male, age 51, unknown 441.9
2261 Male, age 18, unknown 429.4
1895 Male, age 76, right hemisphere 353.6
Ventral tegmental area
nTPM: 509.2
2021 Male, age 53, unknown 608.1
1915 Female, age 42, unknown 566.0
2410 Female, age 72, unknown 505.7
1942 Male, age 51, unknown 475.0
2223 Female, age 72, unknown 468.9
2218 Male, age 76, both hemispheres 431.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1305.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1305.4
Samples: 139

Max nTPM: 4854.3
Min nTPM: 378.0
Std nTPM: 578.1
Median nTPM: 1234.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4854.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3168.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3090.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2769.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2641.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2603.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2247.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2153.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2143.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2108.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1992.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.6
FF:10158-103A5 76 years, female 27.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 669.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 669.2
Samples: 4

Max nTPM: 836.2
Min nTPM: 525.4
Sample A Female 836.2
Sample B Female 710.4
Sample C Male 525.4
Sample D Male 604.6
Midbrain
nTPM: 640.7
Samples: 4

Max nTPM: 972.6
Min nTPM: 420.3
Sample A Female 972.6
Sample B Female 740.9
Sample C Male 420.3
Sample D Male 428.8
Periaqueductal gray
nTPM: 527.6
Samples: 3

Max nTPM: 577.2
Min nTPM: 493.5
Sample B Female 577.2
Sample C Male 512.1
Sample D Male 493.5
Superior colliculi
nTPM: 626.3
Samples: 4

Max nTPM: 725.2
Min nTPM: 520.0
Sample A Female 725.2
Sample B Female 687.4
Sample C Male 520.0
Sample D Male 572.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 348.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 348.2
Samples: 4

Max nTPM: 412.3
Min nTPM: 293.6
Sample A Male 412.3
Sample B Male 348.0
Sample C Female 293.6
Sample D Female 338.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
72081492 Antisense, RP_051017_01_C08, Mouse strain C57BL/6J (56 days, male) 4.9
68633443 Antisense, RP_050125_02_H03, Mouse strain C57BL/6J (56 days, male) 2.7

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