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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:177.1 nTPM
HPA Brain:173.9 nTPM
GTEx:177.1 nTPM
FANTOM5:92.4 Scaled Tags Per Million
Pig:167.1 nTPM
Mouse:255.1 nTPM
Allen mouse:22.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.9
Sample id Sample description nTPM
Amygdala
nTPM: 173.9
2814 Male, age 76, right hemisphere 190.3
2695 Female, age 67, right hemisphere 181.7
2514 Male, age 75, right hemisphere 181.3
1987 Female, age 91, left hemisphere 162.1
2517 Female, age 94, left hemisphere 154.0
Basal amygdala
nTPM: 151.6
2609 Male, age 75, right hemisphere 187.8
2110 Male, age 80, left hemisphere 171.1
2685 Female, age 94, left hemisphere 142.9
1955 Male, age 76, both hemispheres 142.0
2827 Female, age 67, right hemisphere 134.7
2243 Female, age 91, right hemisphere 131.2
Central amygdala
nTPM: 162.0
2826 Female, age 94, left hemisphere 194.4
2515 Male, age 75, right hemisphere 177.8
1905 Male, age 76, both hemispheres 168.9
2239 Male, age 80, left hemisphere 140.0
2701 Female, age 91, right hemisphere 128.9
Corticomedial amygdala
nTPM: 144.2
2428 Male, age 75, right hemisphere 194.8
2829 Male, age 80, left hemisphere 180.9
2429 Female, age 94, left hemisphere 135.0
2240 Male, age 76, both hemispheres 121.1
2242 Female, age 91, right hemisphere 120.4
2535 Female, age 67, right hemisphere 112.9
Lateral amygdala
nTPM: 158.4
1883 Male, age 76, both hemispheres 180.4
2516 Male, age 75, right hemisphere 175.9
2534 Female, age 94, left hemisphere 165.3
2830 Female, age 67, right hemisphere 153.9
2256 Male, age 80, left hemisphere 144.0
2255 Female, age 91, right hemisphere 131.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

177.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 177.1
Samples: 152

Max nTPM: 303.5
Min nTPM: 124.1
Std nTPM: 28.6
Median nTPM: 174.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 303.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 254.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 251.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 249.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 248.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 243.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 239.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 234.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 232.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 225.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 224.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 223.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 219.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 218.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 212.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 211.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 209.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 208.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 207.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 207.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 203.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 201.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 200.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 200.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 199.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 199.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 199.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 198.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 198.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 197.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 197.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 197.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 196.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 194.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 194.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 194.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 193.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 193.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 192.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 191.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 189.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 189.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 189.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 189.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 189.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 189.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 188.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 185.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 185.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 185.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 185.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 184.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 182.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 181.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 181.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 180.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 180.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 179.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 179.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 179.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 179.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 179.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 178.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 177.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 177.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 177.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 176.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 176.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 175.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 175.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 175.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 174.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 174.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 174.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 174.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 174.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 173.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 173.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 172.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 172.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 171.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 170.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 170.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 170.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 169.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 169.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 169.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 169.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 169.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 167.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 167.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 167.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 167.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 166.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 166.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 165.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 165.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 165.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 164.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 163.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 163.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 163.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 161.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 161.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 160.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 160.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 159.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 158.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 158.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 158.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 158.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 157.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 157.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 157.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 157.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 156.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 156.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 156.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 155.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 155.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 154.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 154.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 153.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 152.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 152.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 151.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 151.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 151.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 150.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 150.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 147.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 146.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 146.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 146.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 145.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 144.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 144.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 143.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 142.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 141.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 141.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 141.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 140.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 140.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 139.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 139.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 138.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 135.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 132.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 130.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 128.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 124.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

92.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 92.4
FF:10151-102I7 76 years, female 92.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.1
Pig sample Sample description nTPM
Amygdala
nTPM: 167.1
Samples: 4

Max nTPM: 215.0
Min nTPM: 141.3
Sample A Female 215.0
Sample B Female 157.8
Sample C Male 154.3
Sample D Male 141.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

255.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 255.1
Samples: 4

Max nTPM: 277.5
Min nTPM: 245.0
Sample A Male 245.0
Sample B Male 248.9
Sample C Female 277.5
Sample D Female 249.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.4
513227 Antisense, RP_040810_01_C03, Mouse strain C57BL/6J (56 days, male) 22.4

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