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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:237.0 nTPM
HPA Brain:206.6 nTPM
GTEx:237.0 nTPM
FANTOM5:136.9 Scaled Tags Per Million
Pig:266.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

206.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 180.0
1981 Female, age 72, midline 211.9
2565 Male, age 75, midline 195.8
2816 Male, age 47, midline 169.9
2048 Male, age 55, midline 163.1
2194 Female, age 79, both hemispheres 159.2
Cervical spinal cord, dorsal horn
nTPM: 196.4
2173 Female, age 72, unknown 244.2
2296 Male, age 66, both hemispheres 242.0
2069 Male, age 47, both hemispheres 207.7
1877 Male, age 55, unknown 188.0
2297 Male, age 75, both hemispheres 160.4
2721 Male, age 90, both hemispheres 136.0
Cervical spinal cord, ventral horn
nTPM: 206.6
2480 Male, age 75, both hemispheres 234.8
2098 Female, age 72, unknown 229.7
2809 Male, age 90, both hemispheres 214.8
2295 Male, age 66, both hemispheres 194.0
2068 Male, age 55, unknown 190.0
2820 Female, age 79, both hemispheres 176.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 237.0
Samples: 159

Max nTPM: 392.9
Min nTPM: 136.5
Std nTPM: 49.1
Median nTPM: 235.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 392.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 390.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 365.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 343.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 338.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 332.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 332.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 320.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 319.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 316.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 307.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 306.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 305.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 305.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 304.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 298.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 297.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 293.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 291.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 289.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 288.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 288.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 288.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 287.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 287.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 286.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 285.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 285.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 284.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 284.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 282.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 282.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 281.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 281.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 276.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 272.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 270.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 270.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 269.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 268.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 268.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 267.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 266.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 266.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 266.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 265.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 265.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 261.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 259.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 258.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 258.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 257.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 257.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 257.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 252.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 250.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 249.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 249.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 245.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 245.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 245.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 244.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 244.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 244.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 242.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 242.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 241.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 240.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 239.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 239.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 238.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 238.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 238.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 237.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 237.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 236.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 236.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 236.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 235.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 235.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 235.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 234.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 232.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 231.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 229.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 229.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 228.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 227.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 226.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 226.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 225.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 225.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 223.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 223.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 222.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 221.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 221.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 218.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 218.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 218.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 218.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 218.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 217.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 216.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 215.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 214.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 214.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 213.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 213.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 212.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 209.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 209.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 208.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 206.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 206.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 205.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 202.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 201.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 199.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 199.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 198.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 197.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 197.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 196.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 195.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 194.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 194.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 194.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 193.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 193.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 191.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 189.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 189.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 189.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 185.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 185.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 184.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 184.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 184.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 183.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 183.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 182.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 180.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 178.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 177.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 177.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 175.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 173.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 166.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 166.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 159.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 157.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 157.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 156.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 146.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 145.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 142.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 136.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 136.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

136.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 136.9
FF:10181-103D1 60 years, female 170.4
FF:10159-103A6 76 years, female 103.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

266.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 246.0
Samples: 4

Max nTPM: 253.8
Min nTPM: 240.6
Sample A Female 245.2
Sample B Female 240.6
Sample C Male 253.8
Sample D Male 244.3
Ventral spinal cord
nTPM: 266.8
Samples: 4

Max nTPM: 294.1
Min nTPM: 254.9
Sample A Female 259.7
Sample B Female 258.6
Sample C Male 254.9
Sample D Male 294.1

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