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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:145.3 nTPM
GTEx:145.3 nTPM
FANTOM5:86.5 Scaled Tags Per Million
Pig:129.2 nTPM
Mouse:189.9 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 145.3
Samples: 105

Max nTPM: 244.6
Min nTPM: 112.4
Std nTPM: 25.1
Median nTPM:
218_1 71 years, female 244.6
322_1 76 years, male 221.9
307_1 66 years, female 219.0
379_1 60 years, male 216.0
375_1 74 years, female 204.0
35_1 74 years, female 201.8
386_1 76 years, male 198.9
6_1 73 years, female 193.2
316_1 62 years, male 188.4
491_1 89 years, female 174.9
495_1 57 years, female 174.2
447_1 81 years, male 173.5
145_1 84 years, male 172.8
173_1 67 years, male 170.5
319_1 81 years, male 168.7
237_1 82 years, male 167.6
4_1 88 years, female 167.3
353_1 82 years, female 163.7
43_1 64 years, female 163.1
354_1 81 years, female 162.8
17_1 71 years, male 161.5
490_1 67 years, female 160.9
518_1 75 years, female 156.8
384_1 83 years, male 156.1
41_1 94 years, female 155.7
2_1 77 years, female 154.8
321_1 62 years, female 152.6
42_1 85 years, male 152.4
120_1 70 years, female 152.1
139_1 64 years, female 151.5
320_1 89 years, female 151.5
348_1 84 years, male 151.0
347_1 72 years, male 150.7
308_1 70 years, female 150.2
126_1 63 years, male 149.5
377_1 82 years, female 149.2
318_1 68 years, male 145.7
117_1 61 years, male 144.5
350_1 84 years, female 143.8
315_1 62 years, female 143.7
376_1 75 years, female 143.7
396_1 62 years, male 143.6
389_1 86 years, female 143.2
351_1 91 years, male 142.8
352_1 62 years, male 142.6
265_1 87 years, male 141.1
311_1 78 years, male 140.9
466_1 57 years, female 140.6
355_1 70 years, female 140.4
286_1 68 years, female 140.1
335_1 73 years, female 140.0
501_1 88 years, male 139.8
349_1 83 years, male 139.1
415_1 77 years, female 138.8
18_1 88 years, male 138.7
246_1 77 years, male 137.8
405_1 91 years, male 137.6
468_1 89 years, male 137.0
499_1 55 years, female 135.2
172_1 72 years, female 135.1
324_1 76 years, male 134.8
452_1 88 years, female 134.7
81_1 67 years, male 134.1
243_1 75 years, male 133.9
153_1 70 years, female 133.6
295_1 61 years, female 133.0
526_1 61 years, male 133.0
142_1 61 years, female 132.8
288_1 66 years, female 132.2
291_1 76 years, male 132.2
425_1 59 years, female 131.2
293_1 68 years, female 130.9
292_1 71 years, male 130.6
503_1 68 years, male 130.6
394_1 75 years, female 130.2
163_1 78 years, male 129.8
356_1 87 years, female 129.6
254_1 77 years, female 129.0
266_1 85 years, male 128.8
413_1 59 years, female 128.7
251_1 78 years, male 128.6
137_1 83 years, male 128.5
115_1 83 years, male 128.0
317_1 60 years, male 126.8
480_1 63 years, male 126.8
162_1 79 years, female 126.4
404_1 82 years, female 126.4
109_1 81 years, female 126.2
414_1 84 years, female 125.5
506_1 65 years, male 125.1
189_1 76 years, male 123.9
229_1 69 years, female 122.7
517_1 88 years, male 122.6
264_1 73 years, female 121.3
313_1 79 years, female 121.2
99_1 64 years, male 121.1
406_1 79 years, male 121.0
119_1 70 years, female 118.0
89_1 63 years, male 117.5
217_1 76 years, male 117.5
314_1 67 years, male 116.4
32_1 67 years, male 114.9
149_1 88 years, male 113.0
9_1 66 years, female 112.8
177_1 74 years, male 112.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 86.5
FF:10030-101E3 24-65 years, mixed 86.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.2
Pig sample Sample description nTPM
Retina
nTPM: 129.2
Samples: 4

Max nTPM: 147.2
Min nTPM: 112.7
Sample A Female 118.9
Sample B Female 138.0
Sample C Male 147.2
Sample D Male 112.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

189.9
Mouse sample Sample description nTPM
Retina
nTPM: 189.9
Samples: 4

Max nTPM: 219.3
Min nTPM: 162.7
Sample A Male 192.4
Sample B Male 185.3
Sample C Female 219.3
Sample D Female 162.7

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