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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:464.3 nTPM
HPA Brain:169.9 nTPM
GTEx:464.3 nTPM
FANTOM5:381.0 Scaled Tags Per Million
Pig:64.3 nTPM
Mouse:238.5 nTPM
Allen mouse:9.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.9
Sample id Sample description nTPM
Amygdala
nTPM: 169.9
2814 Male, age 76, right hemisphere 188.1
2695 Female, age 67, right hemisphere 183.9
2514 Male, age 75, right hemisphere 178.7
1987 Female, age 91, left hemisphere 155.2
2517 Female, age 94, left hemisphere 143.4
Basal amygdala
nTPM: 169.0
2609 Male, age 75, right hemisphere 188.0
2243 Female, age 91, right hemisphere 187.1
2827 Female, age 67, right hemisphere 165.5
1955 Male, age 76, both hemispheres 162.7
2685 Female, age 94, left hemisphere 157.2
2110 Male, age 80, left hemisphere 153.6
Central amygdala
nTPM: 159.7
2826 Female, age 94, left hemisphere 174.5
1905 Male, age 76, both hemispheres 161.3
2239 Male, age 80, left hemisphere 161.1
2701 Female, age 91, right hemisphere 160.9
2515 Male, age 75, right hemisphere 140.8
Corticomedial amygdala
nTPM: 162.2
2242 Female, age 91, right hemisphere 176.6
2829 Male, age 80, left hemisphere 166.2
2240 Male, age 76, both hemispheres 164.4
2535 Female, age 67, right hemisphere 163.7
2429 Female, age 94, left hemisphere 157.1
2428 Male, age 75, right hemisphere 145.4
Lateral amygdala
nTPM: 151.4
1883 Male, age 76, both hemispheres 163.9
2516 Male, age 75, right hemisphere 162.4
2534 Female, age 94, left hemisphere 162.3
2830 Female, age 67, right hemisphere 162.3
2255 Female, age 91, right hemisphere 128.9
2256 Male, age 80, left hemisphere 128.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

464.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 464.3
Samples: 152

Max nTPM: 1220.8
Min nTPM: 237.2
Std nTPM: 137.2
Median nTPM: 442.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1220.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1094.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 971.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 837.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 836.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 813.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 781.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 662.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 660.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 642.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 633.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 608.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 600.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 598.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 593.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 591.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 583.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 578.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 577.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 571.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 566.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 565.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 557.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 557.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 549.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 542.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 542.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 535.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 531.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 525.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 524.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 514.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 513.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 510.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 509.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 508.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 503.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 503.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 500.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 499.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 496.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 495.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 491.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 490.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 488.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 488.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 487.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 486.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 486.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 485.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 483.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 480.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 478.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 478.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 474.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 473.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 471.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 470.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 470.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 468.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 467.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 466.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 464.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 464.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 463.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 461.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 458.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 458.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 456.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 449.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 445.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 444.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 444.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 443.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 443.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 442.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 441.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 441.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 440.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 438.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 438.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 437.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 437.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 437.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 432.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 431.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 429.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 428.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 427.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 427.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 425.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 422.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 421.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 419.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 418.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 418.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 418.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 414.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 410.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 409.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 405.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 404.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 404.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 402.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 400.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 399.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 394.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 393.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 393.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 391.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 386.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 386.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 384.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 384.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 382.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 380.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 376.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 375.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 373.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 368.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 367.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 366.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 365.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 363.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 362.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 362.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 358.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 357.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 353.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 352.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 349.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 348.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 344.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 343.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 343.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 337.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 335.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 334.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 324.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 322.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 320.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 320.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 319.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 312.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 311.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 311.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 311.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 303.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 295.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 289.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 248.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 237.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

381.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 381.0
FF:10151-102I7 76 years, female 381.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.3
Pig sample Sample description nTPM
Amygdala
nTPM: 64.3
Samples: 4

Max nTPM: 91.7
Min nTPM: 52.6
Sample A Female 91.7
Sample B Female 52.6
Sample C Male 58.6
Sample D Male 54.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

238.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 238.5
Samples: 4

Max nTPM: 268.8
Min nTPM: 227.4
Sample A Male 228.2
Sample B Male 229.7
Sample C Female 268.8
Sample D Female 227.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.7
68117986 Antisense, RP_040929_01_H04, Mouse strain C57BL/6J (56 days, male) 9.7

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