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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:392.4 nTPM
HPA Brain:169.8 nTPM
GTEx:392.4 nTPM
FANTOM5:490.8 Scaled Tags Per Million
Pig:136.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 167.4
1981 Female, age 72, midline 195.0
2194 Female, age 79, both hemispheres 168.9
2565 Male, age 75, midline 167.9
2816 Male, age 47, midline 164.9
2048 Male, age 55, midline 140.0
Cervical spinal cord, dorsal horn
nTPM: 169.8
2173 Female, age 72, unknown 197.2
2721 Male, age 90, both hemispheres 180.2
2296 Male, age 66, both hemispheres 173.3
2069 Male, age 47, both hemispheres 161.5
1877 Male, age 55, unknown 159.1
2297 Male, age 75, both hemispheres 147.1
Cervical spinal cord, ventral horn
nTPM: 168.4
2098 Female, age 72, unknown 186.4
2068 Male, age 55, unknown 170.8
2480 Male, age 75, both hemispheres 166.5
2809 Male, age 90, both hemispheres 164.2
2295 Male, age 66, both hemispheres 163.8
2820 Female, age 79, both hemispheres 158.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

392.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 392.4
Samples: 159

Max nTPM: 660.2
Min nTPM: 228.3
Std nTPM: 80.3
Median nTPM: 386.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 660.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 628.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 592.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 575.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 568.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 560.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 549.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 547.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 534.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 529.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 526.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 523.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 503.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 502.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 493.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 493.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 490.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 487.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 482.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 468.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 463.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 462.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 462.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 461.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 461.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 460.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 459.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 459.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 458.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 457.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 457.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 456.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 453.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 453.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 452.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 452.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 448.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 448.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 445.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 445.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 445.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 443.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 440.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 436.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 433.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 432.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 431.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 427.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 427.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 426.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 426.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 426.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 426.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 424.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 423.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 423.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 423.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 423.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 422.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 421.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 418.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 417.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 414.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 413.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 413.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 413.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 412.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 411.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 406.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 406.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 405.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 401.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 401.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 398.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 398.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 393.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 389.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 387.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 386.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 386.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 386.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 383.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 380.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 379.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 377.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 374.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 372.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 371.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 370.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 369.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 369.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 369.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 366.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 366.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 364.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 364.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 364.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 364.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 363.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 363.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 362.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 359.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 358.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 358.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 356.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 356.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 355.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 351.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 350.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 349.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 348.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 347.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 342.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 339.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 339.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 339.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 338.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 335.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 335.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 335.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 334.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 332.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 331.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 329.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 327.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 327.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 325.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 325.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 324.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 320.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 316.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 314.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 310.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 309.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 306.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 306.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 304.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 304.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 304.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 301.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 300.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 299.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 299.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 292.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 288.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 287.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 281.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 280.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 280.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 275.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 274.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 271.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 262.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 259.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 249.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 246.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 246.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 230.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 228.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

490.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 490.8
FF:10181-103D1 60 years, female 710.4
FF:10159-103A6 76 years, female 271.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 104.7
Samples: 4

Max nTPM: 120.7
Min nTPM: 92.8
Sample A Female 101.8
Sample B Female 92.8
Sample C Male 120.7
Sample D Male 103.3
Ventral spinal cord
nTPM: 136.4
Samples: 4

Max nTPM: 151.2
Min nTPM: 127.8
Sample A Female 134.3
Sample B Female 127.8
Sample C Male 151.2
Sample D Male 132.1

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