We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CPE
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CPE
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:944.5 nTPM
HPA Brain:767.3 nTPM
GTEx:944.5 nTPM
FANTOM5:1867.4 Scaled Tags Per Million
Pig:466.8 nTPM
Mouse:2832.4 nTPM
Allen mouse:26.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

767.3
Sample id Sample description nTPM
Amygdala
nTPM: 767.3
2514 Male, age 75, right hemisphere 1049.5
1987 Female, age 91, left hemisphere 915.3
2517 Female, age 94, left hemisphere 769.8
2814 Male, age 76, right hemisphere 612.9
2695 Female, age 67, right hemisphere 489.2
Basal amygdala
nTPM: 646.7
2609 Male, age 75, right hemisphere 1006.9
2243 Female, age 91, right hemisphere 804.1
2110 Male, age 80, left hemisphere 723.5
2685 Female, age 94, left hemisphere 634.4
1955 Male, age 76, both hemispheres 517.5
2827 Female, age 67, right hemisphere 193.9
Central amygdala
nTPM: 686.9
2515 Male, age 75, right hemisphere 796.2
2239 Male, age 80, left hemisphere 703.9
2701 Female, age 91, right hemisphere 688.3
2826 Female, age 94, left hemisphere 635.0
1905 Male, age 76, both hemispheres 611.0
Corticomedial amygdala
nTPM: 714.4
2829 Male, age 80, left hemisphere 937.7
2428 Male, age 75, right hemisphere 905.3
2242 Female, age 91, right hemisphere 891.9
2429 Female, age 94, left hemisphere 753.2
2240 Male, age 76, both hemispheres 492.2
2535 Female, age 67, right hemisphere 306.2
Lateral amygdala
nTPM: 551.4
2516 Male, age 75, right hemisphere 822.1
2255 Female, age 91, right hemisphere 659.6
1883 Male, age 76, both hemispheres 593.5
2534 Female, age 94, left hemisphere 551.8
2256 Male, age 80, left hemisphere 513.3
2830 Female, age 67, right hemisphere 168.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

944.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 944.5
Samples: 152

Max nTPM: 2522.3
Min nTPM: 70.2
Std nTPM: 480.9
Median nTPM: 866.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 2522.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2435.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2285.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2235.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1919.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1905.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1835.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1806.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1783.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1714.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1603.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1595.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1587.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1558.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1554.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1531.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1503.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1486.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1477.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1472.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1455.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1452.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1446.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1402.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1400.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1387.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1373.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1353.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1350.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1348.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1346.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1342.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1337.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1327.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1321.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1309.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1295.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1289.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1278.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1258.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1229.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1228.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1214.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1185.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1172.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1167.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1161.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1158.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1156.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1146.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1137.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1100.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1097.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1097.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1095.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1083.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1080.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1072.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1060.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1058.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1053.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1045.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1033.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1033.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1031.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1024.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 994.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 991.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 969.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 961.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 953.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 911.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 908.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 889.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 885.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 872.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 860.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 859.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 843.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 831.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 831.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 827.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 801.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 799.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 797.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 793.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 784.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 776.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 769.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 754.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 753.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 747.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 739.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 730.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 726.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 722.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 718.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 718.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 716.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 701.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 698.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 696.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 696.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 682.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 667.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 651.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 644.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 624.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 623.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 617.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 604.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 598.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 592.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 591.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 580.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 579.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 577.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 571.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 566.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 558.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 555.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 543.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 542.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 526.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 500.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 489.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 479.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 462.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 445.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 439.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 429.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 429.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 405.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 390.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 377.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 358.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 345.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 341.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 322.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 306.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 298.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 278.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 277.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 264.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 261.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 257.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 251.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 236.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 185.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 181.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 126.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 70.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1867.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1867.4
FF:10151-102I7 76 years, female 1867.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

466.8
Pig sample Sample description nTPM
Amygdala
nTPM: 466.8
Samples: 4

Max nTPM: 546.6
Min nTPM: 427.2
Sample A Female 546.6
Sample B Female 427.2
Sample C Male 445.0
Sample D Male 448.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2832.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 2832.4
Samples: 4

Max nTPM: 3009.7
Min nTPM: 2609.3
Sample A Male 2609.3
Sample B Male 2758.1
Sample C Female 3009.7
Sample D Female 2952.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

26.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 26.9
1692 Antisense, RP_Baylor_102700, Mouse strain C57BL/6J (56 days, male) 26.9
1691 Antisense, RP_Baylor_102700, Mouse strain C57BL/6J (56 days, male) 20.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org