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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:190.9 nTPM
HPA Brain:542.1 nTPM
GTEx:190.9 nTPM
FANTOM5:643.1 Scaled Tags Per Million
Pig:397.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

542.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 486.6
1981 Female, age 72, midline 627.0
2048 Male, age 55, midline 613.7
2194 Female, age 79, both hemispheres 400.4
2816 Male, age 47, midline 397.5
2565 Male, age 75, midline 394.6
Cervical spinal cord, dorsal horn
nTPM: 542.1
2721 Male, age 90, both hemispheres 689.6
2173 Female, age 72, unknown 601.1
2069 Male, age 47, both hemispheres 561.1
1877 Male, age 55, unknown 495.0
2296 Male, age 66, both hemispheres 480.9
2297 Male, age 75, both hemispheres 424.6
Cervical spinal cord, ventral horn
nTPM: 410.1
2098 Female, age 72, unknown 641.1
2295 Male, age 66, both hemispheres 462.5
2068 Male, age 55, unknown 408.4
2809 Male, age 90, both hemispheres 401.4
2820 Female, age 79, both hemispheres 274.3
2480 Male, age 75, both hemispheres 273.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 190.9
Samples: 159

Max nTPM: 699.5
Min nTPM: 69.5
Std nTPM: 94.5
Median nTPM: 168.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 699.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 508.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 437.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 430.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 425.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 419.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 389.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 389.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 371.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 369.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 367.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 342.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 329.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 321.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 319.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 318.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 313.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 302.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 297.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 293.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 287.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 285.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 283.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 281.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 278.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 277.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 277.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 267.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 262.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 254.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 245.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 242.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 239.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 237.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 236.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 233.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 232.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 231.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 231.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 229.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 226.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 226.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 225.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 223.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 222.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 218.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 218.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 216.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 215.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 215.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 214.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 214.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 208.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 206.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 206.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 204.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 200.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 199.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 197.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 196.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 195.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 195.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 195.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 189.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 188.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 187.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 184.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 184.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 184.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 184.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 180.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 180.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 179.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 179.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 176.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 175.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 174.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 174.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 168.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 168.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 166.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 163.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 157.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 155.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 153.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 153.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 153.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 153.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 152.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 150.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 148.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 147.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 145.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 144.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 144.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 143.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 143.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 143.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 143.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 142.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 142.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 141.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 141.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 141.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 140.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 140.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 139.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 135.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 135.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 134.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 132.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 131.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 130.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 130.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 129.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 128.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 128.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 128.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 128.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 127.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 126.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 122.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 121.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 121.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 120.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 120.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 120.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 119.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 117.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 115.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 114.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 114.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 113.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 110.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 109.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 109.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 107.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 106.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 105.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 104.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 103.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 102.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 102.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 100.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 100.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 99.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 98.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 95.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 89.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 87.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 85.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 85.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 84.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 83.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 82.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 80.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 76.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 70.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 69.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

643.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 643.1
FF:10159-103A6 76 years, female 780.9
FF:10181-103D1 60 years, female 505.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

397.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 300.8
Samples: 4

Max nTPM: 364.8
Min nTPM: 182.0
Sample A Female 364.8
Sample B Female 330.5
Sample C Male 182.0
Sample D Male 325.7
Ventral spinal cord
nTPM: 397.3
Samples: 4

Max nTPM: 456.4
Min nTPM: 352.5
Sample A Female 421.8
Sample B Female 456.4
Sample C Male 358.3
Sample D Male 352.5

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