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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:512.7 nTPM
HPA Brain:553.2 nTPM
GTEx:512.7 nTPM
FANTOM5:521.2 Scaled Tags Per Million
Pig:336.8 nTPM
Mouse:371.1 nTPM
Allen mouse:10.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

553.2
Sample id Sample description nTPM
Amygdala
nTPM: 553.2
2695 Female, age 67, right hemisphere 691.4
1987 Female, age 91, left hemisphere 609.6
2814 Male, age 76, right hemisphere 539.2
2514 Male, age 75, right hemisphere 480.6
2517 Female, age 94, left hemisphere 445.1
Basal amygdala
nTPM: 409.6
2609 Male, age 75, right hemisphere 485.5
1955 Male, age 76, both hemispheres 476.4
2110 Male, age 80, left hemisphere 453.5
2243 Female, age 91, right hemisphere 401.2
2685 Female, age 94, left hemisphere 354.2
2827 Female, age 67, right hemisphere 286.9
Central amygdala
nTPM: 499.3
2515 Male, age 75, right hemisphere 599.9
1905 Male, age 76, both hemispheres 574.4
2826 Female, age 94, left hemisphere 527.2
2701 Female, age 91, right hemisphere 401.6
2239 Male, age 80, left hemisphere 393.6
Corticomedial amygdala
nTPM: 394.8
2428 Male, age 75, right hemisphere 524.2
2242 Female, age 91, right hemisphere 454.3
2829 Male, age 80, left hemisphere 405.5
2240 Male, age 76, both hemispheres 389.0
2429 Female, age 94, left hemisphere 331.1
2535 Female, age 67, right hemisphere 264.7
Lateral amygdala
nTPM: 449.1
1883 Male, age 76, both hemispheres 497.3
2516 Male, age 75, right hemisphere 484.1
2256 Male, age 80, left hemisphere 477.8
2534 Female, age 94, left hemisphere 453.1
2255 Female, age 91, right hemisphere 419.4
2830 Female, age 67, right hemisphere 362.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

512.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 512.7
Samples: 152

Max nTPM: 1243.5
Min nTPM: 256.8
Std nTPM: 154.2
Median nTPM: 496.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1243.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1032.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1014.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 899.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 845.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 836.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 818.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 818.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 805.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 786.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 726.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 713.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 711.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 706.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 701.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 698.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 691.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 680.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 676.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 673.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 652.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 647.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 640.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 639.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 623.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 618.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 615.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 610.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 608.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 608.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 608.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 607.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 607.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 604.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 600.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 597.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 596.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 593.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 581.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 581.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 581.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 580.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 580.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 575.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 570.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 570.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 569.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 561.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 560.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 557.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 557.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 553.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 550.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 540.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 540.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 533.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 531.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 531.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 528.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 526.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 525.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 525.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 520.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 520.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 518.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 514.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 510.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 509.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 507.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 506.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 506.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 504.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 502.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 501.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 498.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 497.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 496.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 486.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 485.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 479.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 475.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 473.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 471.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 470.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 461.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 459.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 457.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 457.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 456.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 456.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 453.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 453.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 451.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 449.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 447.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 446.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 445.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 443.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 443.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 442.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 438.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 435.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 433.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 431.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 424.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 424.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 423.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 421.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 421.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 418.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 415.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 413.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 413.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 413.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 412.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 412.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 412.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 401.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 401.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 401.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 400.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 396.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 394.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 391.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 390.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 389.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 387.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 384.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 371.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 368.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 366.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 360.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 357.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 351.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 349.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 348.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 344.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 342.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 332.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 331.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 321.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 320.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 315.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 311.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 310.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 309.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 296.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 283.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 279.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 277.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 258.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 256.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

521.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 521.2
FF:10151-102I7 76 years, female 521.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

336.8
Pig sample Sample description nTPM
Amygdala
nTPM: 336.8
Samples: 4

Max nTPM: 414.3
Min nTPM: 289.9
Sample A Female 414.3
Sample B Female 310.7
Sample C Male 289.9
Sample D Male 332.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

371.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 371.1
Samples: 4

Max nTPM: 400.1
Min nTPM: 349.6
Sample A Male 367.9
Sample B Male 349.6
Sample C Female 400.1
Sample D Female 366.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.2
68269526 Antisense, RP_041129_01_G04, Mouse strain C57BL/6J (56 days, male) 11.5
227 Antisense, RP_Baylor_102672, Mouse strain C57BL/6J (56 days, male) 9.0
226 Antisense, RP_Baylor_102672, Mouse strain C57BL/6J (56 days, male) 8.2

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