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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:562.6 nTPM
FANTOM5:563.8 Scaled Tags Per Million
Pig:311.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA007234Antibody CAB002507
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

562.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 562.6
Samples: 246

Max nTPM: 1378.3
Min nTPM: 219.0
Std nTPM: 164.3
Median nTPM: 536.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1378.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1182.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1099.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1036.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1019.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1000.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 972.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 913.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 900.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 878.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 876.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 873.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 864.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 862.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 859.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 851.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 821.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 799.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 783.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 779.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 776.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 775.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 774.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 766.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 763.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 758.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 752.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 751.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 740.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 737.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 737.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 734.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 731.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 726.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 724.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 721.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 718.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 717.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 716.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 709.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 709.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 706.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 700.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 697.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 692.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 688.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 687.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 684.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 683.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 681.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 679.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 677.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 674.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 674.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 672.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 671.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 668.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 666.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 665.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 662.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 654.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 650.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 650.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 647.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 646.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 642.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 639.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 638.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 637.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 637.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 635.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 633.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 624.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 623.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 622.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 621.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 617.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 616.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 614.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 613.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 610.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 603.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 602.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 597.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 592.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 590.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 589.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 588.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 583.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 582.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 580.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 579.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 578.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 573.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 571.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 570.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 568.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 565.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 565.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 563.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 562.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 557.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 557.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 557.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 557.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 556.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 555.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 554.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 552.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 551.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 546.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 546.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 546.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 545.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 544.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 541.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 541.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 539.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 539.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 537.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 537.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 537.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 536.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 535.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 534.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 534.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 532.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 532.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 531.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 531.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 530.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 527.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 523.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 522.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 521.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 518.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 516.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 514.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 514.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 513.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 513.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 512.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 508.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 507.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 506.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 505.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 504.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 504.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 500.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 499.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 499.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 498.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 498.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 496.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 491.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 488.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 488.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 488.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 482.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 480.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 479.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 477.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 475.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 475.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 474.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 472.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 472.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 471.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 467.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 467.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 466.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 465.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 464.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 464.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 460.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 459.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 458.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 456.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 454.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 454.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 454.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 454.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 453.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 452.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 450.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 449.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 446.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 444.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 443.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 442.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 441.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 441.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 440.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 439.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 434.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 431.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 429.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 428.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 427.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 425.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 425.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 422.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 422.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 421.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 419.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 418.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 416.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 416.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 415.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 415.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 404.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 401.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 400.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 400.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 393.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 393.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 390.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 390.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 387.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 386.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 385.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 382.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 382.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 382.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 381.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 380.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 379.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 376.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 376.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 376.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 373.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 373.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 373.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 369.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 368.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 366.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 365.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 352.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 332.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 331.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 313.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 301.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 271.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 252.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 239.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 219.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

563.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 563.8
FF:10164-103B2 76 years, female 563.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

311.7
Pig sample Sample description nTPM
Caudate
nTPM: 311.7
Samples: 4

Max nTPM: 357.7
Min nTPM: 279.1
Sample A Female 293.4
Sample B Female 316.6
Sample C Male 357.7
Sample D Male 279.1

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