Expression of RPS13 in glioma - The Human Protein Atlas

GLIOBLASTOMA MULTIFORME (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

RPS13 is not prognostic in Glioblastoma Multiforme (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 1181.37

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

3-year survival highⁱ N/A

3-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average pTPM

1416.1

Number of samples

141

Samples

Sample	Description	pTPM
TCGA-27-1831-01A	66 years, male, white, stage:'--, dead, 505 days	3190.7
TCGA-27-2521-01A	34 years, male, white, stage:'--, dead, 510 days	2793.2
TCGA-27-2526-01A	79 years, female, white, stage:'--, dead, 87 days	2699.6
TCGA-14-1829-01A	57 years, male, black or african american, stage:'--, alive, 218 days	2680.7
TCGA-19-4065-01A	36 years, male, white, stage:'--, alive, 214 days	2668.1
TCGA-02-2483-01A	43 years, male, asian, stage:'--, alive, 466 days	2586.4
TCGA-06-0178-01A	38 years, male, white, stage:'--, dead, 2681 days	2379.4
TCGA-06-5416-01A	23 years, female, white, stage:'--, alive, 204 days	2338.0
TCGA-06-0138-01A	43 years, male, white, stage:'--, dead, 737 days	2283.3
TCGA-41-5651-01A	59 years, female, black or african american, stage:'--, dead, 460 days	2265.7
TCGA-41-2571-01A	89 years, male, white, stage:'--, dead, 26 days	2183.4
TCGA-06-0139-01A	40 years, male, white, stage:'--, dead, 362 days	2142.0
TCGA-02-0055-01A	62 years, female, white, stage:'--, dead, 76 days	2100.9
TCGA-32-5222-01A	66 years, male, white, stage:'--, dead, 585 days	2074.4
TCGA-27-2524-01A	56 years, male, white, stage:'--, dead, 231 days	2046.8
TCGA-14-1823-01A	58 years, female, white, stage:'--, dead, 543 days	2042.7
TCGA-06-0156-01A	57 years, male, white, stage:'--, dead, 178 days	2040.7
TCGA-06-0219-01A	67 years, male, white, stage:'--, dead, 22 days	1968.7
TCGA-12-5295-01A	60 years, female, white, stage:'--, dead, 454 days	1924.3
TCGA-14-0871-01A	74 years, female, white, stage:'--, dead, 880 days	1910.5
TCGA-14-0817-01A	69 years, female, white, stage:'--, dead, 164 days	1853.4
TCGA-02-2486-01A	64 years, male, white, stage:'--, dead, 618 days	1826.0
TCGA-14-2554-01A	52 years, female, white, stage:'--, dead, 532 days	1788.6
TCGA-28-5220-01A	67 years, male, white, stage:'--, dead, 388 days	1770.2
TCGA-12-5299-01A	56 years, female, white, stage:'--, dead, 98 days	1768.6
TCGA-06-5417-01A	45 years, female, white, stage:'--, alive, 155 days	1740.5
TCGA-32-2634-01A	82 years, male, white, stage:'--, alive, 693 days	1716.4
TCGA-06-5413-01A	67 years, male, white, stage:'--, alive, 268 days	1716.1
TCGA-06-0210-01A	72 years, female, white, stage:'--, dead, 225 days	1679.7
TCGA-06-5418-01A	75 years, female, white, stage:'--, dead, 83 days	1663.8
TCGA-26-5132-01A	74 years, male, white, stage:'--, alive, 286 days	1663.5
TCGA-12-3652-01A	60 years, male, white, stage:'--, dead, 1062 days	1641.3
TCGA-12-0821-01A	62 years, male, white, stage:'--, dead, 323 days	1636.3
TCGA-06-0130-01A	54 years, male, white, stage:'--, dead, 394 days	1627.8
TCGA-02-2485-01A	53 years, male, black or african american, stage:'--, alive, 470 days	1603.8
TCGA-06-0749-01A	50 years, male, black or african american, stage:'--, dead, 82 days	1602.2
TCGA-27-2528-01A	62 years, male, white, stage:'--, dead, 480 days	1582.4
TCGA-06-5859-01A	63 years, male, white, stage:'--, alive, 139 days	1578.9
TCGA-06-0238-01A	46 years, male, white, stage:'--, dead, 405 days	1572.9
TCGA-14-1825-01A	70 years, male, white, stage:'--, dead, 232 days	1566.6
TCGA-32-1982-01A	76 years, female, white, stage:'--, dead, 142 days	1549.0
TCGA-06-0745-01A	59 years, male, white, stage:'--, dead, 239 days	1541.2
TCGA-28-5207-01A	71 years, male, white, stage:'--, dead, 343 days	1537.8
TCGA-06-0644-01A	71 years, male, black or african american, stage:'--, dead, 384 days	1530.4
TCGA-19-5960-01A	56 years, male, white, stage:'--, dead, 455 days	1519.4
TCGA-06-5410-01A	72 years, female, white, stage:'--, dead, 108 days	1518.7
TCGA-12-0616-01A	36 years, female, white, stage:'--, dead, 448 days	1508.6
TCGA-06-0744-01A	66 years, male, white, stage:'--, dead, 1426 days	1499.3
TCGA-76-4925-01A	76 years, male, white, stage:'--, dead, 146 days	1490.8
TCGA-14-0787-01A	69 years, male, asian, stage:'--, dead, 68 days	1488.6
TCGA-76-4927-01A	58 years, male, white, stage:'--, dead, 535 days	1487.9
TCGA-06-5412-01A	78 years, female, white, stage:'--, dead, 138 days	1466.2
TCGA-06-0132-01A	49 years, male, white, stage:'--, dead, 771 days	1464.1
TCGA-28-5204-01A	72 years, male, white, stage:'--, dead, 454 days	1464.0
TCGA-27-2519-01A	48 years, male, white, stage:'--, dead, 550 days	1450.8
TCGA-06-2559-01A	83 years, male, white, stage:'--, dead, 150 days	1420.8
TCGA-06-5411-01A	51 years, male, white, stage:'--, dead, 254 days	1413.5
TCGA-32-4213-01A	47 years, female, white, stage:'--, alive, 604 days	1409.0
TCGA-27-2523-01A	63 years, male, white, stage:'--, dead, 489 days	1403.3
TCGA-28-5218-01A	63 years, male, white, stage:'--, dead, 157 days	1382.0
TCGA-28-5208-01A	52 years, male, white, stage:'--, dead, 544 days	1376.3
TCGA-76-4929-01A	76 years, female, white, stage:'--, dead, 111 days	1375.5
TCGA-06-0129-01A	30 years, male, asian, stage:'--, dead, 1024 days	1366.5
TCGA-06-2563-01A	72 years, female, white, stage:'--, alive, 932 days	1363.5
TCGA-19-2629-01A	60 years, male, white, stage:'--, dead, 737 days	1337.4
TCGA-08-0386-01A	74 years, male, white, stage:'--, dead, 548 days	1328.5
TCGA-26-1442-01A	43 years, male, white, stage:'--, alive, 953 days	1328.4
TCGA-06-5408-01A	54 years, female, white, stage:'--, dead, 357 days	1316.5
TCGA-76-4932-01A	50 years, female, white, stage:'--, dead, 1458 days	1316.3
TCGA-06-0645-01A	55 years, female, white, stage:'--, dead, 175 days	1302.8
TCGA-27-1834-01A	56 years, male, white, stage:'--, dead, 1233 days	1298.8
TCGA-06-2567-01A	65 years, male, white, stage:'--, dead, 133 days	1287.0
TCGA-06-2569-01A	24 years, female, black or african american, stage:'--, alive, 13 days	1286.7
TCGA-12-3650-01A	46 years, male, white, stage:'--, dead, 333 days	1280.5
TCGA-76-4931-01A	70 years, female, white, stage:'--, dead, 279 days	1269.0
TCGA-14-1034-01A	60 years, female, stage:'--, dead, 485 days	1263.0
TCGA-06-2557-01A	76 years, male, black or african american, stage:'--, dead, 33 days	1260.7
TCGA-32-1980-01A	72 years, male, white, stage:'--, dead, 36 days	1255.1
TCGA-14-0789-01A	54 years, male, white, stage:'--, dead, 342 days	1245.4
TCGA-19-2620-01A	70 years, male, white, stage:'--, dead, 148 days	1244.4
TCGA-27-1832-01A	59 years, female, white, stage:'--, dead, 300 days	1243.4
TCGA-26-5134-01A	74 years, male, white, stage:'--, alive, 167 days	1242.1
TCGA-19-2625-01A	76 years, female, white, stage:'--, dead, 124 days	1234.8
TCGA-12-0618-01A	49 years, male, white, stage:'--, dead, 395 days	1231.2
TCGA-06-0168-01A	59 years, female, white, stage:'--, dead, 598 days	1221.9
TCGA-41-2572-01A	67 years, male, white, stage:'--, dead, 406 days	1221.1
TCGA-06-0190-01A	62 years, male, white, stage:'--, dead, 317 days	1216.2
TCGA-28-5216-01A	52 years, male, white, stage:'--, alive, 415 days	1211.5
TCGA-32-2615-01A	62 years, male, white, stage:'--, dead, 485 days	1210.9
TCGA-06-0141-01A	62 years, male, white, stage:'--, dead, 313 days	1198.6
TCGA-32-2638-01A	67 years, male, white, stage:'--, dead, 766 days	1198.1
TCGA-26-5135-01A	72 years, female, white, stage:'--, dead, 270 days	1194.4
TCGA-06-0750-01A	43 years, male, white, stage:'--, dead, 28 days	1186.6
TCGA-06-2565-01A	59 years, male, asian, stage:'--, dead, 506 days	1183.4
TCGA-06-0174-01A	54 years, male, white, stage:'--, dead, 98 days	1181.4
TCGA-06-0743-01A	69 years, male, white, stage:'--, dead, 803 days	1178.4
TCGA-06-5414-01A	61 years, male, white, stage:'--, alive, 273 days	1176.9
TCGA-28-2513-01A	69 years, female, white, stage:'--, alive, 222 days	1167.5
TCGA-06-2570-01A	21 years, female, white, stage:'--, alive, 958 days	1136.8
TCGA-06-2558-01A	75 years, female, white, stage:'--, dead, 380 days	1128.0
TCGA-06-5856-01A	58 years, male, white, stage:'--, dead, 114 days	1126.9
TCGA-27-1835-01A	53 years, female, white, stage:'--, dead, 648 days	1121.3
TCGA-15-0742-01A	65 years, male, white, stage:'--, dead, 419 days	1115.5
TCGA-06-1804-01A	81 years, female, white, stage:'--, dead, 414 days	1115.3
TCGA-26-5139-01A	65 years, female, white, stage:'--, alive, 48 days	1106.3
TCGA-19-2624-01A	51 years, male, white, stage:'--, dead, 5 days	1096.1
TCGA-15-1444-01A	21 years, male, white, stage:'--, dead, 1537 days	1071.2
TCGA-32-2616-01A	48 years, female, white, stage:'--, dead, 224 days	1069.9
TCGA-41-3915-01A	48 years, male, white, stage:'--, dead, 360 days	1067.6
TCGA-28-5209-01A	66 years, female, white, stage:'--, alive, 442 days	1067.3
TCGA-28-2509-01A	77 years, female, white, stage:'--, alive, 145 days	1065.9
TCGA-32-1970-01A	59 years, male, white, stage:'--, dead, 468 days	1062.1
TCGA-06-0882-01A	30 years, male, white, stage:'--, dead, 632 days	1055.3
TCGA-06-0686-01A	53 years, male, white, stage:'--, dead, 432 days	1055.0
TCGA-28-5215-01A	62 years, female, white, stage:'--, dead, 335 days	1043.8
TCGA-06-0747-01A	53 years, male, white, stage:'--, dead, 82 days	1039.1
TCGA-06-0211-01A	47 years, male, white, stage:'--, dead, 360 days	1034.1
TCGA-06-0878-01A	74 years, male, white, stage:'--, alive, 218 days	1024.6
TCGA-16-0846-01A	85 years, male, white, stage:'--, dead, 119 days	1021.9
TCGA-06-0646-01A	60 years, male, white, stage:'--, dead, 175 days	1017.5
TCGA-28-2514-01A	45 years, male, asian, stage:'--, alive, 160 days	995.6
TCGA-06-2564-01A	50 years, male, white, stage:'--, alive, 181 days	985.0
TCGA-28-1753-01A	53 years, male, white, stage:'--, alive, 37 days	983.8
TCGA-06-5858-01A	45 years, female, white, stage:'--, alive, 187 days	979.8
TCGA-06-0125-01A	63 years, female, white, stage:'--, dead, 1448 days	974.4
TCGA-06-2562-01A	81 years, male, white, stage:'--, dead, 382 days	966.4
TCGA-06-0184-01A	63 years, male, white, stage:'--, dead, 2126 days	951.9
TCGA-26-5133-01A	59 years, male, white, stage:'--, alive, 452 days	949.1
TCGA-27-1837-01A	36 years, male, white, stage:'--, dead, 427 days	943.4
TCGA-32-2632-01A	80 years, male, white, stage:'--, dead, 269 days	930.8
TCGA-06-0158-01A	73 years, male, white, stage:'--, dead, 329 days	926.5
TCGA-12-3653-01A	34 years, female, white, stage:'--, dead, 442 days	925.6
TCGA-27-1830-01A	57 years, male, white, stage:'--, dead, 154 days	911.8
TCGA-12-0619-01A	60 years, male, white, stage:'--, dead, 1062 days	909.0
TCGA-06-2561-01A	53 years, female, white, stage:'--, dead, 537 days	901.3
TCGA-19-2619-01A	55 years, female, black or african american, stage:'--, alive, 294 days	869.1
TCGA-06-0187-01A	69 years, male, white, stage:'--, dead, 828 days	829.7
TCGA-41-4097-01A	63 years, female, white, stage:'--, dead, 6 days	819.4
TCGA-06-0157-01A	63 years, female, white, stage:'--, dead, 97 days	764.1
TCGA-19-1390-01A	63 years, female, white, stage:'--, dead, 772 days	748.7
TCGA-02-0047-01A	78 years, male, white, stage:'--, dead, 448 days	509.4
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GLIOBLASTOMA MULTIFORME (VALIDATION) - Interactive survival scatter plotⁱ

& Survival analysisⁱ

RPS13 is not prognostic in Glioblastoma Multiforme (validation)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 373.04

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

3-year survival highⁱ N/A

3-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average pTPM

418.9

Number of samples

Samples

Sample	Description	pTPM
AK043	N, NA, stage:NA, alive, 660 days	1748.3
AK133	N, NA, stage:NA, dead, 360 days	876.9
AK041	N, NA, stage:NA, alive, 810 days	587.2
AK066	N, NA, stage:NA, alive, 960 days	579.6
AK124	N, NA, stage:NA, alive, 1920 days	563.1
AK236	N, NA, stage:NA, dead, 360 days	546.6
AK072	N, NA, stage:NA, dead, 150 days	534.2
AK142	N, NA, stage:NA, alive, 90 days	521.6
AK156	N, NA, stage:NA, dead, 330 days	518.8
AK049	N, NA, stage:NA, dead, 180 days	518.5
AK205	N, NA, stage:NA, dead, 120 days	516.9
AK002	N, NA, stage:NA, dead, 570 days	511.5
AK117	N, NA, stage:NA, dead, 210 days	510.3
AK165	N, NA, stage:NA, alive, 360 days	483.2
AK195	N, NA, stage:NA, dead, 390 days	461.2
AK088	N, NA, stage:NA, dead, 360 days	459.5
AK139	N, NA, stage:NA, dead, 270 days	456.7
AK055	N, NA, stage:NA, dead, 240 days	443.2
AK030	N, NA, stage:NA, dead, 120 days	439.8
AK183	N, NA, stage:NA, alive, 360 days	415.2
AK185	N, NA, stage:NA, alive, 330 days	409.3
AK213	N, NA, stage:NA, alive, 2010 days	405.5
AK167	N, NA, stage:NA, dead, 180 days	404.3
AK123	N, NA, stage:NA, dead, 180 days	402.6
AK074	N, NA, stage:NA, alive, 300 days	396.7
AK178	N, NA, stage:NA, dead, 240 days	387.6
AK051	N, NA, stage:NA, dead, 360 days	382.4
AK134	N, NA, stage:NA, dead, 360 days	381.3
AK158	N, NA, stage:NA, dead, 360 days	376.8
AK218	N, NA, stage:NA, dead, 180 days	376.7
AK102	N, NA, stage:NA, alive, 1740 days	369.3
AK085	N, NA, stage:NA, alive, 660 days	365.9
AK098	N, NA, stage:NA, dead, 660 days	352.7
AK099	N, NA, stage:NA, dead, 420 days	351.1
AK079	N, NA, stage:NA, dead, 210 days	350.6
AK015	N, NA, stage:NA, alive, 720 days	348.5
AK068	N, NA, stage:NA, alive, 360 days	342.9
AK081	N, NA, stage:NA, dead, 180 days	340.0
AK103	N, NA, stage:NA, alive, 1320 days	335.2
AK188	N, NA, stage:NA, alive, 420 days	330.2
AK071	N, NA, stage:NA, dead, 540 days	327.6
AK231	N, NA, stage:NA, dead, 240 days	324.9
AK173	N, NA, stage:NA, dead, 180 days	320.3
AK153	N, NA, stage:NA, dead, 240 days	311.9
AK091	N, NA, stage:NA, dead, 210 days	311.5
AK149	N, NA, stage:NA, dead, 420 days	308.3
AK005	N, NA, stage:NA, dead, 240 days	304.0
AK035	N, NA, stage:NA, dead, 210 days	300.9
AK003	N, NA, stage:NA, dead, 600 days	298.3
AK216	N, NA, stage:NA, dead, 360 days	290.7
AK076	N, NA, stage:NA, alive, 660 days	286.7
AK226	N, NA, stage:NA, dead, 360 days	286.5
AK089	N, NA, stage:NA, dead, 330 days	274.9
AK199	N, NA, stage:NA, alive, 1860 days	268.4
AK100	N, NA, stage:NA, alive, 960 days	255.9
AK227	N, NA, stage:NA, alive, 300 days	247.8
AK053	N, NA, stage:NA, dead, 300 days	246.8
AK006	N, NA, stage:NA, dead, 360 days	232.3
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GLIOBLASTOMA MULTIFORME - Protein relative expression (CPTAC)

Number of samples

110

Samples

Sample ID	Sample type	nRPX
CPT0221180003	Tumor	0.9
CPT0168080003	Tumor	0.7
CPT0218330004	Tumor	0.6
CPT0127480003	Tumor	0.6
CPT0206230003	Tumor	0.5
CPT0218690004	Tumor	0.5
CPT0217430008	Tumor	0.5
CPT0127420003	Tumor	0.5
CPT0206560003	Tumor	0.5
CPT0190360004	Tumor	0.5
CPT0182580003	Tumor	0.4
CPT0168380003	Tumor	0.4
CPT0087570003	Tumor	0.4
CPT0093360003	Tumor	0.4
CPT0168590003	Tumor	0.4
CPT0219080004	Tumor	0.4
CPT0078580003	Tumor	0.3
CPT0217000004	Tumor	0.3
CPT0206000004	Tumor	0.3
CPT0093550003	Tumor	0.3
CPT0217710008	Tumor	0.3
CPT0224540004	Tumor	0.3
CPT0093510003	Tumor	0.3
CPT0064650003	Tumor	0.3
CPT0205450004	Tumor	0.3
CPT0171580008	Tumor	0.3
CPT0162020003	Tumor	0.3
CPT0087730003	Tumor	0.3
CPT0186100003	Tumor	0.2
CPT0189650004	Tumor	0.2
CPT0175060003	Tumor	0.2
CPT0064890003	Tumor	0.2
CPT0123530003	Tumor	0.2
CPT0125570003	Tumor	0.2
CPT0125510003	Tumor	0.2
CPT0167640003	Tumor	0.2
CPT0217060003	Tumor	0.2
CPT0206780003	Tumor	0.2
CPT0205570003	Tumor	0.2
CPT0125220003	Tumor	0.2
CPT0089150003	Tumor	0.2
CPT0218770003	Tumor	0.2
CPT0206110003	Tumor	0.2
CPT0205780003	Tumor	0.2
CPT0162100003	Tumor	0.1
CPT0168830003	Tumor	0.1
CPT0218890004	Tumor	0.1
CPT0224390004	Tumor	0.1
CPT0167860004	Tumor	0.1
CPT0206880003	Tumor	0.1
CPT0093450003	Tumor	0.1
CPT0218830004	Tumor	0.1
CPT0071100003	Tumor	0.1
CPT0002410011	Tumor	0.1
CPT0216920008	Tumor	0.1
CPT0087950003	Tumor	0.1
CPT0182500003	Tumor	0.1
CPT0161730003	Tumor	0.0
CPT0079790003	Tumor	0.0
CPT0189750004	Tumor	0.0
CPT0208980003	Tumor	0.0
CPT0206670004	Tumor	0.0
CPT0205670004	Tumor	0.0
CPT0207090003	Tumor	0.0
CPT0189570004	Tumor	0.0
CPT0087680003	Tumor	0.0
CPT0168480003	Tumor	0.0
CPT0093590003	Tumor	0.0
CPT0167970003	Tumor	0.0
CPT0217880003	Tumor	0.0
CPT0207030003	Tumor	0.0
CPT0092440003	Tumor	0.0
CPT0217190003	Tumor	0.0
CPT0206450003	Tumor	0.0
CPT0189460003	Tumor	-0.1
CPT0217100003	Tumor	-0.1
CPT0199770003	Tumor	-0.1
CPT0218960004	Tumor	-0.1
CPT0167750004	Tumor	-0.1
CPT0167530003	Tumor	-0.1
CPT0168270003	Tumor	-0.1
CPT0201710003	Tumor	-0.1
CPT0209440003	Tumor	-0.1
CPT0189850004	Tumor	-0.1
CPT0196850003	Tumor	-0.2
CPT0218670003	Tumor	-0.2
CPT0228220003	Tumor	-0.2
CPT0204380003	Normal	-0.2
CPT0168720003	Tumor	-0.2
CPT0182550003	Tumor	-0.2
CPT0225730003	Tumor	-0.2
CPT0224600003	Tumor	-0.2
CPT0205890003	Tumor	-0.2
CPT0225760003	Tumor	-0.3
CPT0204350003	Normal	-0.3
CPT0104330003	Tumor	-0.3
CPT0206330003	Tumor	-0.4
CPT0204420003	Normal	-0.4
CPT0204370003	Normal	-0.4
CPT0162140003	Tumor	-0.4
CPT0190240004	Tumor	-0.4
CPT0189250003	Tumor	-0.5
CPT0204400003	Normal	-0.5
CPT0204330003	Normal	-0.5
CPT0204340003	Normal	-0.6
CPT0224330003	Tumor	-0.6
CPT0204360003	Normal	-0.6
CPT0104220003	Tumor	-0.7
CPT0204410003	Normal	-0.8
CPT0204390003	Normal	-1.0
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GLIOMA - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.	Antibody HPA005985
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Glioma, malignant, High grade
Glioma, malignant, NOS
Glioma, malignant, Low grade