We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GAPDH
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • GAPDH
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:2727.2 nTPM
FANTOM5:1304.9 Scaled Tags Per Million
Pig:2157.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040067Antibody HPA061280Antibody CAB005197Antibody CAB016392Antibody CAB079968
Glial cells Not detectedLowLowMediumNot detected
Neuronal cells MediumLowMediumMediumNot detected











CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2727.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2727.2
Samples: 246

Max nTPM: 5911.5
Min nTPM: 1476.7
Std nTPM: 562.3
Median nTPM: 2651.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 5911.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 4585.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 4547.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 4296.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 4253.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 4168.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 4047.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 3997.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 3927.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 3760.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 3755.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 3741.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 3732.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 3636.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 3505.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 3504.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 3432.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 3421.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 3416.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 3407.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 3377.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 3371.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 3370.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 3353.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 3338.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 3338.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 3328.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 3315.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 3313.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 3306.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 3300.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 3293.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 3292.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 3290.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 3282.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 3276.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 3243.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 3241.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 3204.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 3201.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 3201.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 3196.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 3185.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 3176.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 3163.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 3151.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 3149.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 3141.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 3130.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 3124.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 3121.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 3113.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 3105.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 3092.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 3074.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 3066.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 3051.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 3049.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 3046.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 3040.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 3039.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 3037.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 3024.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 3014.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 3012.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 3004.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 3001.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 2993.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2989.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2982.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 2980.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 2974.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 2973.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 2970.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 2969.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 2961.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 2960.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 2942.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2936.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 2935.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 2929.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 2927.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2924.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 2921.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 2915.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 2900.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2899.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 2898.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2895.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 2891.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 2879.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 2860.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 2850.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 2846.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 2827.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 2809.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 2793.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 2784.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 2776.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 2774.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 2769.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2758.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 2758.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 2755.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 2751.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 2748.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 2740.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 2712.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 2710.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 2709.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 2705.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 2701.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 2699.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 2692.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 2691.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2677.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2674.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 2672.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 2664.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 2663.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 2660.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 2656.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 2654.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 2649.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 2643.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 2642.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2640.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 2622.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 2617.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 2607.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 2601.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 2591.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 2584.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2583.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 2582.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 2579.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 2569.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 2557.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 2554.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 2554.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 2551.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 2548.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 2546.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 2546.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 2541.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 2541.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 2538.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 2537.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2537.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 2536.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 2534.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 2524.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 2520.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2513.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 2508.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2506.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2495.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 2494.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 2491.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 2480.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 2476.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 2476.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 2462.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2459.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 2451.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 2441.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 2438.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 2435.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 2429.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 2426.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2420.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 2420.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 2415.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 2408.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 2407.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 2405.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 2403.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 2399.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2396.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 2392.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 2391.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 2390.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 2388.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 2373.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 2372.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 2364.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 2363.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 2355.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 2354.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 2338.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 2333.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 2331.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 2330.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 2323.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 2321.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 2317.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 2316.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 2315.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 2315.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 2308.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 2302.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 2297.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 2292.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 2274.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 2271.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 2240.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 2235.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 2234.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 2233.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 2228.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 2224.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 2222.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 2211.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 2203.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 2192.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 2186.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 2186.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 2182.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 2171.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 2163.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 2153.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 2150.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 2147.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2143.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 2125.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2113.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 2099.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 2056.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 2047.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 2036.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1960.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1953.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1908.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1898.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1875.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1848.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1847.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1794.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1754.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1743.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1695.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1693.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1685.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1654.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1622.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1476.7
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1304.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1304.9
FF:10164-103B2 76 years, female 1304.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2157.8
Pig sample Sample description nTPM
Caudate
nTPM: 2157.9
Samples: 4

Max nTPM: 2635.6
Min nTPM: 1852.0
Sample A Female 1852.0
Sample B Female 2288.7
Sample C Male 2635.6
Sample D Male 1855.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org