We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GAPDH
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • GAPDH
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1416.8 nTPM
HPA:1359.8 nTPM
GTEx:1416.8 nTPM
FANTOM5:2648.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040067Antibody HPA061280Antibody CAB005197Antibody CAB016392Antibody CAB079968
Glandular cells MediumLowMediumMediumMedium






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1359.8
overview
Male, age 65
Small intestine sample 232
nTPM: 1365.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1478.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1061.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1533.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1416.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1416.8
Samples: 187

Max nTPM: 3351.7
Min nTPM: 595.8
Std nTPM: 484.2
Median nTPM: 1339.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 3351.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 2983.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 2949.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2642.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 2596.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 2571.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2542.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2467.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 2440.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2388.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 2287.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2230.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 2227.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 2208.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 2167.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 2134.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 2097.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2058.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 2040.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 2032.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 2025.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2016.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2003.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1954.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1924.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1922.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1920.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1904.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1887.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1868.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1840.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1813.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1810.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1778.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1750.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1722.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1718.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1714.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1710.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1684.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1683.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1679.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1677.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1677.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1661.3
GTEX-1192X-2526-SM-59868 50-59 years, male 1643.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1636.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1632.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1630.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1627.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1614.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1611.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1601.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1594.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1590.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1584.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1583.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1575.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1574.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1573.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1569.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1548.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1547.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1546.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1543.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1535.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1532.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1524.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1506.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1499.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1488.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1477.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1477.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 1469.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1462.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1461.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1461.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1461.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1449.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1448.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1445.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1432.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1432.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1429.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1416.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1405.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1404.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1402.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1402.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1382.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1376.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1369.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1344.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1339.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1338.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1334.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1333.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1331.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1312.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1308.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1307.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1305.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1300.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1295.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1291.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1287.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1274.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1272.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1269.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1268.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 1267.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1267.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1258.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1250.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1240.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1233.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1225.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1218.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1205.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1203.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1203.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1197.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1197.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1194.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1189.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1185.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1172.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1167.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1160.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1143.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1116.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1107.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1107.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1105.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1087.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1086.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1081.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1079.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1077.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1063.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1060.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1055.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1047.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1044.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1042.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1039.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1038.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1038.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1035.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1021.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1016.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1007.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 990.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 979.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 972.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 972.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 939.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 938.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 932.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 929.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 928.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 920.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 919.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 907.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 906.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 868.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 862.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 853.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 851.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 842.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 832.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 830.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 823.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 821.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 809.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 808.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 805.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 794.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 778.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 734.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 725.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 714.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 666.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 634.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 624.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 617.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 595.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2648.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2648.5
FF:10024-101D6 15,40,85 years, mixed 2648.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org