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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1621.0 nTPM
GTEx:1621.0 nTPM
FANTOM5:887.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040067Antibody HPA061280Antibody CAB005197Antibody CAB016392Antibody CAB079968
Squamous epithelial cells MediumHighNot detectedMediumMedium







VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1621.0
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1621.0
Samples: 156

Max nTPM: 4533.0
Min nTPM: 539.9
Std nTPM: 758.2
Median nTPM: 1439.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 4533.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 3951.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 3847.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 3823.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 3746.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 3700.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 3477.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 3308.4
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 3078.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2983.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2863.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2816.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2788.6
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 2727.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2703.7
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2655.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2570.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2417.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2349.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2319.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 2309.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2254.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2243.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2243.4
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 2213.8
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 2201.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2197.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2192.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2188.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2179.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2153.6
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2137.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2125.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2114.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2111.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 2097.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2087.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2041.8
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2035.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2034.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1979.9
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1978.2
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1967.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 1966.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1954.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1937.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1935.1
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1900.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1879.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1863.2
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1828.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1789.4
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1775.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1722.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1711.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1707.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1699.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1680.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1670.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1652.9
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1652.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1652.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1642.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1619.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1599.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1573.9
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1566.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1561.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1542.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1537.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1533.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1513.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1496.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1487.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1453.1
GTEX-1C475-0526-SM-793AC 40-49 years, female 1452.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1449.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1443.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1435.9
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1432.3
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1431.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1417.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1398.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1375.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1360.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1358.9
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1357.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1345.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1338.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1328.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1326.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1325.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1323.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1319.5
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1309.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1290.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1280.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1271.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1264.7
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1243.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1238.0
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1235.0
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1224.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1223.8
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1220.4
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1220.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1213.1
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1209.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1180.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1177.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1167.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1157.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1156.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1130.9
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1127.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1112.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1105.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1080.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1075.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1057.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1053.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1048.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1014.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1014.6
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1007.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 992.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 983.5
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 958.8
GTEX-16NPV-2526-SM-6M483 50-59 years, female 942.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 935.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 912.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 895.2
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 894.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 880.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 873.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 871.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 843.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 821.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 816.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 805.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 804.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 801.8
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 797.8
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 759.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 753.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 744.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 730.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 727.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 727.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 714.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 707.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 689.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 620.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 598.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 543.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 539.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

887.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 887.9
FF:10204-103F6 68 years, female 887.9

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