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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:643.8 nTPM
HPA Brain:420.6 nTPM
GTEx:643.8 nTPM
FANTOM5:486.5 Scaled Tags Per Million
Mouse:784.0 nTPM
Allen mouse:22.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

420.6
Sample id Sample description nTPM
Amygdala
nTPM: 420.6
2814 Male, age 76, right hemisphere 523.8
2695 Female, age 67, right hemisphere 491.2
2514 Male, age 75, right hemisphere 428.8
1987 Female, age 91, left hemisphere 385.4
2517 Female, age 94, left hemisphere 274.0
Basal amygdala
nTPM: 328.8
2609 Male, age 75, right hemisphere 500.9
2243 Female, age 91, right hemisphere 358.8
1955 Male, age 76, both hemispheres 353.4
2110 Male, age 80, left hemisphere 322.1
2685 Female, age 94, left hemisphere 242.0
2827 Female, age 67, right hemisphere 195.6
Central amygdala
nTPM: 363.1
1905 Male, age 76, both hemispheres 498.6
2515 Male, age 75, right hemisphere 396.3
2701 Female, age 91, right hemisphere 361.3
2239 Male, age 80, left hemisphere 325.0
2826 Female, age 94, left hemisphere 234.5
Corticomedial amygdala
nTPM: 347.4
2428 Male, age 75, right hemisphere 458.5
2829 Male, age 80, left hemisphere 387.0
2242 Female, age 91, right hemisphere 373.1
2429 Female, age 94, left hemisphere 360.4
2240 Male, age 76, both hemispheres 324.7
2535 Female, age 67, right hemisphere 180.8
Lateral amygdala
nTPM: 308.3
1883 Male, age 76, both hemispheres 469.9
2516 Male, age 75, right hemisphere 442.9
2255 Female, age 91, right hemisphere 276.4
2256 Male, age 80, left hemisphere 250.2
2534 Female, age 94, left hemisphere 211.2
2830 Female, age 67, right hemisphere 199.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

643.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 643.8
Samples: 152

Max nTPM: 1456.8
Min nTPM: 136.0
Std nTPM: 215.2
Median nTPM: 626.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1456.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1286.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1206.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1164.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1148.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1143.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1112.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1075.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1074.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1049.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1037.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1031.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 942.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 935.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 881.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 880.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 880.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 860.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 850.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 849.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 848.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 848.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 845.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 827.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 824.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 820.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 818.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 816.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 808.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 806.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 802.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 796.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 796.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 788.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 775.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 772.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 751.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 751.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 750.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 746.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 746.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 732.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 727.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 723.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 723.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 716.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 712.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 712.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 708.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 699.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 693.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 688.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 688.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 685.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 683.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 682.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 682.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 675.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 672.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 662.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 659.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 654.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 651.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 650.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 648.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 648.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 647.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 646.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 645.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 644.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 641.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 639.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 632.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 631.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 629.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 628.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 624.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 622.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 619.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 615.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 612.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 610.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 608.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 607.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 606.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 605.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 604.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 596.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 594.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 591.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 590.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 590.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 587.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 581.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 579.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 575.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 562.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 561.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 560.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 553.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 546.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 546.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 542.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 531.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 524.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 519.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 516.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 515.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 511.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 511.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 510.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 502.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 495.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 490.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 486.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 482.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 478.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 473.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 470.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 469.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 457.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 456.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 456.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 442.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 441.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 440.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 437.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 433.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 432.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 425.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 418.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 416.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 410.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 410.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 408.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 404.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 401.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 397.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 396.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 375.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 374.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 372.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 369.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 369.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 360.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 358.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 318.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 314.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 311.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 283.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 262.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 136.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

486.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 486.5
FF:10151-102I7 76 years, female 486.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

784.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 784.0
Samples: 4

Max nTPM: 880.9
Min nTPM: 731.6
Sample A Male 731.6
Sample B Male 781.5
Sample C Female 880.9
Sample D Female 742.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.1
74736213 Antisense, RP_060302_02_E08, Mouse strain C57BL/6J (56 days, male) 22.1

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