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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:281.1 nTPM
GTEx:281.1 nTPM
FANTOM5:271.3 Scaled Tags Per Million
Mouse:475.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

281.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 281.1
Samples: 105

Max nTPM: 495.2
Min nTPM: 158.4
Std nTPM: 57.6
Median nTPM:
413_1 59 years, female 495.2
490_1 67 years, female 445.7
501_1 88 years, male 385.3
229_1 69 years, female 377.8
162_1 79 years, female 374.3
43_1 64 years, female 372.1
491_1 89 years, female 368.9
117_1 61 years, male 364.3
153_1 70 years, female 355.2
313_1 79 years, female 354.1
142_1 61 years, female 350.0
466_1 57 years, female 349.4
9_1 66 years, female 346.3
120_1 70 years, female 344.8
414_1 84 years, female 344.2
396_1 62 years, male 343.3
6_1 73 years, female 339.3
375_1 74 years, female 339.0
386_1 76 years, male 335.1
315_1 62 years, female 331.7
32_1 67 years, male 327.2
379_1 60 years, male 325.5
126_1 63 years, male 324.8
17_1 71 years, male 323.5
246_1 77 years, male 322.5
265_1 87 years, male 321.9
4_1 88 years, female 321.0
217_1 76 years, male 318.2
139_1 64 years, female 317.7
115_1 83 years, male 317.3
376_1 75 years, female 315.1
243_1 75 years, male 313.2
324_1 76 years, male 311.3
81_1 67 years, male 310.9
145_1 84 years, male 310.0
119_1 70 years, female 307.4
316_1 62 years, male 301.3
149_1 88 years, male 299.6
415_1 77 years, female 296.9
468_1 89 years, male 294.6
322_1 76 years, male 293.6
254_1 77 years, female 290.9
109_1 81 years, female 290.6
321_1 62 years, female 289.8
404_1 82 years, female 289.2
89_1 63 years, male 286.9
18_1 88 years, male 286.4
288_1 66 years, female 286.4
425_1 59 years, female 284.4
452_1 88 years, female 283.6
42_1 85 years, male 279.6
506_1 65 years, male 278.4
2_1 77 years, female 277.5
264_1 73 years, female 277.0
499_1 55 years, female 275.4
35_1 74 years, female 274.5
286_1 68 years, female 273.9
348_1 84 years, male 271.0
377_1 82 years, female 270.2
99_1 64 years, male 270.1
347_1 72 years, male 269.7
320_1 89 years, female 268.8
518_1 75 years, female 268.5
177_1 74 years, male 266.2
137_1 83 years, male 265.0
335_1 73 years, female 264.4
394_1 75 years, female 256.2
319_1 81 years, male 252.7
189_1 76 years, male 252.2
172_1 72 years, female 248.7
237_1 82 years, male 247.3
266_1 85 years, male 245.3
447_1 81 years, male 242.3
352_1 62 years, male 241.1
480_1 63 years, male 241.1
495_1 57 years, female 241.0
526_1 61 years, male 240.2
314_1 67 years, male 239.7
389_1 86 years, female 235.4
173_1 67 years, male 232.0
351_1 91 years, male 232.0
406_1 79 years, male 230.7
311_1 78 years, male 229.3
355_1 70 years, female 226.1
350_1 84 years, female 224.0
295_1 61 years, female 223.1
349_1 83 years, male 222.5
293_1 68 years, female 219.8
291_1 76 years, male 219.5
405_1 91 years, male 218.9
354_1 81 years, female 218.1
251_1 78 years, male 216.6
307_1 66 years, female 214.1
318_1 68 years, male 212.9
384_1 83 years, male 210.9
163_1 78 years, male 210.1
503_1 68 years, male 210.1
308_1 70 years, female 208.6
317_1 60 years, male 206.5
353_1 82 years, female 202.3
292_1 71 years, male 201.8
517_1 88 years, male 195.6
356_1 87 years, female 188.7
41_1 94 years, female 173.1
218_1 71 years, female 158.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

271.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 271.3
FF:10030-101E3 24-65 years, mixed 271.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

475.3
Mouse sample Sample description nTPM
Retina
nTPM: 475.3
Samples: 4

Max nTPM: 499.9
Min nTPM: 430.6
Sample A Male 499.9
Sample B Male 472.7
Sample C Female 498.1
Sample D Female 430.6

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