MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:810.6 nTPM
HPA Brain:570.8 nTPM
GTEx:810.6 nTPM
FANTOM5:451.0 Scaled Tags Per Million
Mouse:1156.9 nTPM
Allen mouse:20.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 570.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 404.7
2019 Male, age 18, unknown 468.0
2411 Female, age 72, unknown 457.8
1827 Male, age 72, unknown 454.1
2828 Female, age 72, unknown 448.8
2219 Male, age 76, both hemispheres 405.0
1870 Female, age 42, unknown 403.7
1833 Male, age 53, unknown 400.3
1830 Male, age 51, unknown 340.5
2666 Male, age 74, left hemisphere 335.3
2586 Male, age 75, left hemisphere 334.0
Dorsal raphe nucleus
nTPM: 505.7
1828 Male, age 53, unknown 582.5
2047 Male, age 72, unknown 557.7
2298 Female, age 72, unknown 530.1
2016 Female, age 72, unknown 464.4
2750 Male, age 76, both hemispheres 393.9
Inferior colliculus
nTPM: 528.0
1890 Male, age 53, unknown 578.5
2097 Female, age 72, unknown 546.2
1848 Female, age 42, unknown 528.4
2849 Male, age 72, unknown 458.9
Median raphe nucleus
nTPM: 438.5
2220 Male, age 76, midline 438.5
Periaquaductal grey, anterior
nTPM: 379.7
1947 Male, age 18, unknown 401.1
2502 Female, age 75, unknown 374.7
1795 Male, age 51, unknown 363.3
Periaquaductal grey, dorsal
nTPM: 437.8
1840 Male, age 53, unknown 503.7
2850 Male, age 76, both hemispheres 426.6
2464 Female, age 72, unknown 422.3
1831 Male, age 72, unknown 398.5
Periaquaductal grey, lateral
nTPM: 387.5
2053 Male, age 18, unknown 402.0
2140 Male, age 76, both hemispheres 387.2
2272 Male, age 74, both hemispheres 373.3
Pretectal area
nTPM: 476.3
2667 Female, age 75, unknown 597.1
1817 Female, age 42, unknown 586.3
1944 Female, age 72, unknown 569.6
1816 Male, age 51, unknown 552.5
2007 Male, age 72, unknown 509.5
1815 Male, age 53, unknown 454.7
2273 Male, age 74, both hemispheres 451.8
2224 Female, age 72, unknown 421.7
2825 Male, age 18, unknown 384.4
2316 Male, age 76, right hemisphere 380.7
2407 Male, age 75, both hemispheres 331.0
Red nucleus
nTPM: 457.6
1821 Female, age 72, unknown 630.4
2503 Female, age 72, unknown 531.9
1954 Female, age 42, unknown 486.1
2823 Male, age 76, right hemisphere 482.2
2227 Male, age 72, unknown 444.5
2769 Male, age 72, unknown 444.5
1865 Male, age 51, unknown 444.4
2725 Female, age 75, unknown 442.6
2588 Male, age 74, left hemisphere 439.4
1904 Male, age 53, unknown 430.0
2785 Male, age 18, unknown 410.7
2584 Male, age 75, left hemisphere 304.3
Substantia nigra
nTPM: 570.8
1916 Female, age 42, unknown 803.3
2241 Male, age 72, unknown 661.9
1851 Male, age 51, unknown 635.7
2699 Male, age 18, unknown 603.9
1889 Female, age 72, unknown 588.9
2665 Male, age 74, both hemispheres 571.6
1941 Male, age 53, unknown 536.6
2409 Female, age 72, unknown 492.3
2590 Female, age 75, unknown 454.3
2583 Male, age 75, right hemisphere 359.2
Superior colliculus
nTPM: 408.0
2087 Female, age 72, unknown 503.6
1895 Male, age 76, right hemisphere 495.1
2587 Male, age 74, left hemisphere 454.2
1796 Male, age 53, unknown 408.2
2668 Female, age 75, unknown 402.1
1839 Male, age 51, unknown 401.9
2261 Male, age 18, unknown 391.2
2664 Male, age 75, both hemispheres 370.1
1913 Female, age 42, unknown 330.9
1995 Male, age 72, unknown 322.1
Ventral tegmental area
nTPM: 486.5
2410 Female, age 72, unknown 597.3
1915 Female, age 42, unknown 593.9
2218 Male, age 76, both hemispheres 528.3
1942 Male, age 51, unknown 446.8
2223 Female, age 72, unknown 392.0
2021 Male, age 53, unknown 361.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 810.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 810.6
Samples: 139

Max nTPM: 1732.1
Min nTPM: 321.0
Std nTPM: 254.0
Median nTPM: 777.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1732.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1597.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 1467.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1370.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1350.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1340.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1262.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1245.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 1240.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1209.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1208.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 451.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 451.0
FF:10158-103A5 76 years, female 451.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1156.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 1156.9
Samples: 4

Max nTPM: 1191.4
Min nTPM: 1113.6
Sample A Male 1191.4
Sample B Male 1156.3
Sample C Female 1113.6
Sample D Female 1166.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 20.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.0
74736213 Antisense, RP_060302_02_E08, Mouse strain C57BL/6J (56 days, male) 20.0

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