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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:667.4 nTPM
HPA Brain:496.8 nTPM
GTEx:667.4 nTPM
FANTOM5:321.4 Scaled Tags Per Million
Pig:114.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

496.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 445.5
1981 Female, age 72, midline 565.3
2194 Female, age 79, both hemispheres 497.9
2565 Male, age 75, midline 440.4
2048 Male, age 55, midline 383.0
2816 Male, age 47, midline 340.8
Cervical spinal cord, dorsal horn
nTPM: 452.8
2173 Female, age 72, unknown 688.7
2069 Male, age 47, both hemispheres 484.6
2296 Male, age 66, both hemispheres 478.3
2297 Male, age 75, both hemispheres 378.2
1877 Male, age 55, unknown 364.8
2721 Male, age 90, both hemispheres 321.9
Cervical spinal cord, ventral horn
nTPM: 496.8
2480 Male, age 75, both hemispheres 575.0
2068 Male, age 55, unknown 567.7
2295 Male, age 66, both hemispheres 516.4
2820 Female, age 79, both hemispheres 445.5
2098 Female, age 72, unknown 439.5
2809 Male, age 90, both hemispheres 436.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

667.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 667.4
Samples: 159

Max nTPM: 1400.8
Min nTPM: 252.0
Std nTPM: 191.5
Median nTPM: 639.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1400.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1266.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1235.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1196.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1143.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1110.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1088.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1079.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 970.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 963.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 931.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 920.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 920.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 918.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 903.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 882.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 881.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 876.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 871.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 848.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 845.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 843.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 840.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 837.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 835.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 835.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 831.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 824.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 822.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 819.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 816.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 808.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 805.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 791.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 791.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 790.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 785.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 785.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 784.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 784.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 783.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 782.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 771.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 767.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 767.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 761.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 761.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 754.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 752.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 751.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 749.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 741.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 741.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 739.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 735.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 723.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 716.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 715.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 714.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 713.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 711.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 709.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 704.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 702.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 698.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 695.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 692.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 690.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 688.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 683.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 678.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 671.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 671.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 668.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 667.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 667.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 666.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 660.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 646.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 639.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 634.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 626.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 624.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 623.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 617.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 616.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 612.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 605.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 603.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 600.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 599.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 595.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 588.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 586.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 586.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 585.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 579.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 576.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 575.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 574.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 573.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 571.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 569.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 568.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 568.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 562.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 562.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 561.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 557.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 556.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 552.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 551.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 550.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 550.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 547.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 544.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 543.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 540.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 539.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 539.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 531.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 531.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 530.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 525.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 525.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 524.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 522.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 516.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 514.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 511.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 504.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 495.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 492.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 492.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 490.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 479.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 478.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 478.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 476.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 475.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 466.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 458.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 452.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 449.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 443.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 441.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 436.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 428.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 425.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 411.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 394.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 393.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 387.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 386.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 383.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 373.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 336.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 327.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 252.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

321.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 321.4
FF:10181-103D1 60 years, female 431.7
FF:10159-103A6 76 years, female 211.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 93.3
Samples: 4

Max nTPM: 102.4
Min nTPM: 89.5
Sample A Female 89.5
Sample B Female 89.7
Sample C Male 102.4
Sample D Male 91.5
Ventral spinal cord
nTPM: 114.6
Samples: 4

Max nTPM: 128.3
Min nTPM: 102.6
Sample A Female 102.6
Sample B Female 128.3
Sample C Male 123.2
Sample D Male 104.2

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