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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
652.2
Sample id
Sample description
nTPM
Amygdala nTPM: 652.2
2814
Male, age 76, right hemisphere
745.0
2514
Male, age 75, right hemisphere
721.8
2695
Female, age 67, right hemisphere
670.8
2517
Female, age 94, left hemisphere
582.6
1987
Female, age 91, left hemisphere
540.5
Basal amygdala nTPM: 538.8
2609
Male, age 75, right hemisphere
622.3
1955
Male, age 76, both hemispheres
594.5
2110
Male, age 80, left hemisphere
563.7
2827
Female, age 67, right hemisphere
525.3
2685
Female, age 94, left hemisphere
499.4
2243
Female, age 91, right hemisphere
427.7
Central amygdala nTPM: 569.9
1905
Male, age 76, both hemispheres
674.0
2239
Male, age 80, left hemisphere
579.4
2701
Female, age 91, right hemisphere
557.6
2826
Female, age 94, left hemisphere
525.9
2515
Male, age 75, right hemisphere
512.3
Corticomedial amygdala nTPM: 504.5
2428
Male, age 75, right hemisphere
587.5
2240
Male, age 76, both hemispheres
575.6
2429
Female, age 94, left hemisphere
556.2
2829
Male, age 80, left hemisphere
485.3
2242
Female, age 91, right hemisphere
424.5
2535
Female, age 67, right hemisphere
397.7
Lateral amygdala nTPM: 574.7
2516
Male, age 75, right hemisphere
669.8
1883
Male, age 76, both hemispheres
669.6
2256
Male, age 80, left hemisphere
601.2
2830
Female, age 67, right hemisphere
597.9
2534
Female, age 94, left hemisphere
472.9
2255
Female, age 91, right hemisphere
436.9
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
153.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 153.0
Samples: 152
Max nTPM: 330.9
Min nTPM: 25.5
Std nTPM: 48.6
Median nTPM: 145.5
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
330.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
328.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
273.6
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
267.8
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
252.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
252.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
238.3
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
235.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
230.6
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
229.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
225.9
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
225.7
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
224.9
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
222.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
220.7
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
220.7
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
217.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
215.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
213.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
203.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
203.5
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
203.4
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
202.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
202.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
201.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
200.2
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
196.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
196.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
196.1
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
192.8
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
188.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
187.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
186.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
184.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
184.4
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
181.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
181.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
180.8
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
180.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
179.4
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
179.3
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
175.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
173.8
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
173.8
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
171.9
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
171.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
170.7
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
170.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
168.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
167.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
166.3
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
165.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
164.7
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
164.1
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
163.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
163.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
160.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
160.4
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
159.7
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
158.0
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
157.6
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
156.9
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
156.4
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
155.5
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
155.0
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
154.5
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
153.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
152.6
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
152.0
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
151.4
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
151.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
151.1
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
147.3
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
146.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
145.9
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
145.6
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
145.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
145.1
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
145.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
144.4
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
144.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
142.5
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
142.1
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
142.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
141.9
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
140.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
140.1
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
140.0
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
139.4
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
139.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
138.5
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
137.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
137.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
136.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
135.5
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
134.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
133.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
131.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
130.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
130.4
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
130.3
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
130.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
128.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
127.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
126.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
125.9
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
125.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
122.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
121.6
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
121.4
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
121.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
120.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
120.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
119.8
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
119.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
118.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
118.1
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
116.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
116.2
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
115.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
115.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
114.9
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
113.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
112.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
112.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
112.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
112.5
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
111.0
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
109.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
109.3
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
106.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
105.9
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
105.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
100.6
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
98.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
97.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
97.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
96.6
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
95.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
91.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
91.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
88.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
85.9
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
84.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
84.0
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
79.4
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
77.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
76.7
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
76.1
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
74.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
73.9
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
25.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
89.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 89.6
Samples: 4
Max nTPM: 107.4
Min nTPM: 78.1
Sample A
Male
78.1
Sample B
Male
84.6
Sample C
Female
107.4
Sample D
Female
88.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
