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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

47.910
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1154.6 nTPM
FANTOM5:776.7 Scaled Tags Per Million
Pig:642.1 nTPM
Allen mouse:9.2 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA019123
Medulla oblongata mean intensity 47.910
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 14.383
Raphe magnus nucleus 14.165
Cochlear nucleus 17.852
Lateral paragigantocellular nucleus 4.668
Raphe pallidus nucleus 1.781
Facial nucleus 6.008
Hypoglossal nucleus 12.644
Ambiguus nucleus 23.808
External cuneate nucleus 12.220
Inferior olivary nucleus 47.910
Raphe obscures nucleus 12.133
Dorsal motor nucleus of vagus 12.265

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1154.6
Sample id Sample description nTPM
Area postrema
nTPM: 997.0
2306 Male, age 80, both hemispheres 1171.7
2799 Male, age 61, both hemispheres 1121.8
2054 Male, age 76, both hemispheres 697.7
Dorsal medullary reticular nucleus
nTPM: 735.1
2373 Male, age 61, both hemispheres 790.2
2040 Female, age 85, both hemispheres 744.9
2088 Male, age 76, both hemispheres 670.1
Dorsal motor vagal complex
nTPM: 670.9
2185 Male, age 76, both hemispheres 869.8
2797 Male, age 61, both hemispheres 730.2
2000 Male, age 74, unknown 703.4
2813 Female, age 72, unknown 701.6
2807 Female, age 85, both hemispheres 687.1
2643 Male, age 74, both hemispheres 611.5
2133 Female, age 91, both hemispheres 552.2
2844 Male, age 55, unknown 511.4
Gigantocellular reticular nuclei, medullary
nTPM: 793.1
2314 Male, age 61, both hemispheres 1118.8
1876 Female, age 85, both hemispheres 910.6
2387 Female, age 91, both hemispheres 852.5
2022 Male, age 76, right hemisphere 688.4
2310 Male, age 80, both hemispheres 675.6
2462 Male, age 74, both hemispheres 512.8
Gigantocellular reticular nuclei, pars
nTPM: 704.1
2706 Male, age 80, both hemispheres 777.3
2330 Male, age 80, both hemispheres 775.2
2336 Male, age 61, both hemispheres 764.5
2084 Female, age 85, both hemispheres 675.4
2168 Male, age 76, both hemispheres 528.1
Inferior olive
nTPM: 914.9
2178 Male, age 61, both hemispheres 1097.2
2628 Female, age 91, both hemispheres 936.4
2563 Male, age 74, both hemispheres 872.0
2085 Female, age 85, both hemispheres 855.7
2379 Male, age 80, both hemispheres 813.2
Lateral medullary reticular nucleus
nTPM: 929.6
2374 Male, age 61, both hemispheres 1045.5
2852 Male, age 80, both hemispheres 1042.5
2305 Male, age 74, both hemispheres 1005.3
2190 Female, age 85, both hemispheres 895.1
2804 Female, age 91, both hemispheres 839.0
2044 Male, age 76, both hemispheres 750.5
Medial olivary nucleus
nTPM: 1154.6
1943 Male, age 61, both hemispheres 1386.4
1962 Male, age 76, both hemispheres 1180.7
2851 Male, age 80, both hemispheres 1076.0
2138 Female, age 91, both hemispheres 975.2
Medial vestibular nucleus
nTPM: 752.3
2801 Male, age 74, both hemispheres 926.6
2803 Female, age 91, both hemispheres 921.2
2093 Male, age 80, both hemispheres 778.5
2624 Male, age 61, both hemispheres 726.3
2743 Female, age 85, both hemispheres 612.4
2134 Male, age 76, both hemispheres 548.7
Motor hypoglossal nucleus
nTPM: 705.1
2182 Male, age 80, both hemispheres 785.9
2132 Female, age 85, both hemispheres 772.1
2125 Female, age 91, both hemispheres 771.5
2461 Male, age 61, both hemispheres 672.4
2277 Male, age 76, both hemispheres 523.3
Nucleus ambiguus
nTPM: 815.9
2071 Male, age 76, both hemispheres 1190.8
2096 Female, age 85, both hemispheres 441.0
Nucleus cuneatus
nTPM: 846.4
2808 Female, age 85, both hemispheres 1117.1
2380 Male, age 80, both hemispheres 1095.8
2381 Male, age 80, both hemispheres 1015.1
2376 Male, age 61, both hemispheres 804.5
2100 Male, age 76, both hemispheres 803.6
2805 Female, age 91, both hemispheres 777.2
2564 Male, age 74, both hemispheres 737.5
2562 Male, age 61, both hemispheres 635.3
2131 Male, age 76, both hemispheres 631.2
Nucleus gracilis
nTPM: 1050.1
2382 Male, age 80, both hemispheres 1284.7
2627 Male, age 74, both hemispheres 961.7
2299 Female, age 85, both hemispheres 903.8
Nucleus raphe obscurus
nTPM: 1120.4
2845 Female, age 85, midline 1226.1
2142 Male, age 76, midline 1173.8
2800 Male, age 61, midline 961.2
Nucleus raphe pallidus
nTPM: 1058.2
2145 Male, age 76, midline 1231.9
1924 Male, age 61, midline 1131.2
2183 Male, age 80, midline 811.4
Nucleus tractus solitarii
nTPM: 543.7
2144 Female, age 91, right hemisphere 695.0
2656 Male, age 76, both hemispheres 544.6
2191 Female, age 85, both hemispheres 489.0
2307 Male, age 80, both hemispheres 446.3
Parvicellular reticular nuclei
nTPM: 762.7
2095 Male, age 76, both hemispheres 869.0
2119 Male, age 80, both hemispheres 829.8
2558 Male, age 74, both hemispheres 589.2
Parvicellular reticular nuclei, medullary
nTPM: 673.2
2189 Female, age 91, both hemispheres 713.0
2181 Male, age 80, left hemisphere 659.9
2091 Female, age 85, both hemispheres 646.9
Peritrigeminal nucleus
nTPM: 826.1
2136 Male, age 76, both hemispheres 884.3
2179 Male, age 61, both hemispheres 820.4
2067 Female, age 85, both hemispheres 773.6
Prepositus hypoglossal nucleus
nTPM: 770.2
2855 Female, age 85, right hemisphere 899.0
2086 Male, age 80, both hemispheres 641.4
Spinal trigeminal nucleus, caudal
nTPM: 786.0
2312 Male, age 61, both hemispheres 970.3
2308 Male, age 80, both hemispheres 834.1
2642 Male, age 74, both hemispheres 741.0
2390 Female, age 91, both hemispheres 712.6
2447 Male, age 76, both hemispheres 671.9
Spinal trigeminal nucleus, interpolar
nTPM: 665.6
2389 Female, age 91, both hemispheres 758.8
2386 Female, age 85, both hemispheres 700.0
2033 Male, age 80, both hemispheres 669.9
2625 Male, age 61, both hemispheres 601.6
2066 Male, age 76, right hemisphere 597.9
Spinal vestibular nucleus
nTPM: 765.8
2806 Female, age 85, both hemispheres 928.4
2748 Male, age 76, both hemispheres 854.3
2186 Female, age 91, both hemispheres 750.6
2384 Male, age 74, both hemispheres 736.9
2796 Male, age 61, both hemispheres 675.5
2780 Male, age 80, both hemispheres 648.9
Superior vestibular nucleus
nTPM: 779.2
2015 Male, age 80, both hemispheres 793.0
2383 Male, age 74, both hemispheres 787.3
2061 Male, age 76, both hemispheres 757.3
Ventral medullary reticular nucleus
nTPM: 808.9
2372 Male, age 61, both hemispheres 893.3
2060 Male, age 76, both hemispheres 724.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 822.3
2118 Male, age 80, both hemispheres 957.5
2180 Male, age 61, both hemispheres 904.1
1986 Male, age 76, both hemispheres 806.6
2302 Female, age 91, both hemispheres 745.6
2741 Female, age 85, both hemispheres 697.9

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

776.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 776.7
FF:10038-101F2 18-64 years, mixed 1073.8
FF:10155-103A2 76 years, female 833.3
FF:10174-103C3 60 years, female 423.1

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

642.1
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 642.1
Samples: 4

Max nTPM: 756.4
Min nTPM: 531.3
Sample A Female 706.4
Sample B Female 531.3
Sample C Male 574.1
Sample D Male 756.4

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 9.2
1151 Antisense, RP_Baylor_102604, Mouse strain C57BL/6J (56 days, male) 12.7
68797858 Antisense, RP_050215_01_C08, Mouse strain C57BL/6J (56 days, male) 12.3
73635471 Antisense, RP_051130_02_F07, Mouse strain C57BL/6J (56 days, male) 2.5

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