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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
892.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 875.1
2188
Female, age 91, both hemispheres
1011.9
2301
Female, age 85, both hemispheres
1008.9
2090
Male, age 80, both hemispheres
920.7
1984
Male, age 76, both hemispheres
559.0
Dorsal cochlear nucleus nTPM: 745.1
2187
Female, age 91, both hemispheres
847.1
2378
Male, age 80, both hemispheres
816.9
2802
Male, age 74, right hemisphere
776.9
2058
Male, age 76, both hemispheres
676.0
2370
Male, age 61, both hemispheres
608.4
Dorsal tegmental nucleus nTPM: 745.4
2083
Male, age 80, both hemispheres
831.4
2326
Male, age 74, both hemispheres
751.0
1936
Male, age 76, left hemisphere
732.0
2358
Male, age 61, both hemispheres
667.2
Dorsolateral tegmental area nTPM: 762.1
2751
Female, age 85, both hemispheres
980.2
2337
Male, age 61, both hemispheres
911.0
2654
Male, age 80, both hemispheres
838.8
2360
Male, age 74, both hemispheres
541.9
2141
Male, age 76, both hemispheres
538.5
Kolliker-Fuse nucleus nTPM: 877.2
2793
Female, age 91, left hemisphere
1020.8
2315
Male, age 76, right hemisphere
915.7
2163
Male, age 80, both hemispheres
695.0
Lateral lemniscal nuclei nTPM: 675.5
2320
Female, age 91, left hemisphere
869.1
2746
Female, age 85, left hemisphere
683.5
2453
Male, age 74, right hemisphere
650.5
2169
Male, age 76, both hemispheres
622.4
2036
Male, age 80, both hemispheres
552.1
Lateral parabrachial nucleus nTPM: 892.0
2792
Male, age 76, both hemispheres
1312.9
2013
Male, age 80, both hemispheres
889.6
2790
Male, age 61, both hemispheres
730.3
2139
Female, age 85, right hemisphere
635.3
Lateral vestibular nucleus nTPM: 765.8
2311
Male, age 80, both hemispheres
844.1
2184
Male, age 76, both hemispheres
687.5
Locus coeruleus nTPM: 520.2
2720
Male, age 74, both hemispheres
621.5
2788
Male, age 74, unknown
606.2
2162
Male, age 80, both hemispheres
555.1
2317
Female, age 72, unknown
544.7
2014
Male, age 55, unknown
476.3
2123
Female, age 91, both hemispheres
419.8
1980
Male, age 76, both hemispheres
417.7
Medial parabrachial nucleus nTPM: 789.4
2170
Female, age 91, both hemispheres
889.3
2854
Male, age 80, both hemispheres
873.8
2463
Female, age 85, right hemisphere
771.2
2786
Male, age 76, both hemispheres
737.4
2156
Male, age 61, both hemispheres
675.5
Medial periolivary nuclei nTPM: 708.3
2081
Male, age 80, both hemispheres
840.4
2791
Male, age 74, right hemisphere
822.9
2458
Female, age 91, both hemispheres
810.0
2063
Male, age 76, both hemispheres
574.0
2171
Female, age 85, both hemispheres
494.3
Motor facial nucleus nTPM: 741.4
2697
Female, age 85, both hemispheres
936.0
2365
Male, age 74, right hemisphere
817.1
2795
Female, age 91, both hemispheres
779.5
2126
Male, age 61, both hemispheres
770.9
2327
Male, age 80, both hemispheres
632.2
2062
Male, age 76, both hemispheres
512.4
Motor trigeminal nucleus nTPM: 703.7
2321
Female, age 91, both hemispheres
790.8
2309
Male, age 76, both hemispheres
744.9
2560
Male, age 74, both hemispheres
703.7
2079
Male, age 80, both hemispheres
641.1
2335
Male, age 61, both hemispheres
637.8
Nuclei of the trapezoid body nTPM: 595.2
2166
Male, age 80, both hemispheres
768.2
2368
Female, age 91, both hemispheres
709.7
1983
Male, age 76, both hemispheres
576.1
2159
Male, age 61, both hemispheres
502.2
2735
Female, age 85, both hemispheres
419.7
Nucleus raphe magnus nTPM: 610.9
2459
Female, age 91, both hemispheres
765.1
2328
Male, age 80, both hemispheres
762.2
2051
Male, age 76, both hemispheres
694.9
2455
Male, age 74, both hemispheres
679.3
2160
Male, age 61, both hemispheres
389.5
2172
Female, age 85, both hemispheres
374.7
Paramedian reticular nucleus nTPM: 762.0
2052
Male, age 76, both hemispheres
1032.1
2050
Female, age 85, both hemispheres
720.6
2057
Male, age 80, both hemispheres
713.2
2313
Male, age 61, both hemispheres
582.0
Pedunculopontine tegmental nucleus nTPM: 797.2
2338
Male, age 61, both hemispheres
941.8
2334
Male, age 80, both hemispheres
787.8
1921
Female, age 85, both hemispheres
662.2
Pontine nuclei nTPM: 710.8
2454
Male, age 74, left hemisphere
975.9
2319
Female, age 91, both hemispheres
934.9
2109
Female, age 72, unknown
804.1
1863
Male, age 55, unknown
724.3
2115
Male, age 80, left hemisphere
711.2
1968
Male, age 76, left hemisphere
635.5
2787
Female, age 85, both hemispheres
452.6
2727
Male, age 61, right hemisphere
448.2
Pontine raphe nucleus nTPM: 593.7
2853
Male, age 76, midline
624.2
2122
Female, age 85, midline
563.2
Posteroventral cochlear nucleus nTPM: 882.0
2341
Male, age 80, both hemispheres
1126.8
2135
Female, age 91, both hemispheres
1125.8
2070
Male, age 76, both hemispheres
773.8
2371
Male, age 61, both hemispheres
759.0
2752
Female, age 85, both hemispheres
624.4
Principal sensory trigeminal nucleus nTPM: 669.2
2367
Female, age 91, left hemisphere
967.8
2324
Male, age 76, both hemispheres
745.9
2008
Male, age 80, left hemisphere
569.4
2158
Male, age 61, both hemispheres
393.9
Reticular pontine nucleus, caudal nTPM: 774.8
2457
Female, age 91, both hemispheres
927.3
2559
Male, age 74, both hemispheres
849.2
2092
Male, age 76, both hemispheres
769.5
2332
Male, age 80, right hemisphere
553.1
Reticular pontine nucleus, oral nTPM: 873.4
2366
Female, age 91, both hemispheres
1033.3
1939
Male, age 80, both hemispheres
912.5
2361
Male, age 74, both hemispheres
843.8
2167
Male, age 76, both hemispheres
811.2
2012
Female, age 85, both hemispheres
766.4
Reticulotegmental nucleus nTPM: 694.4
2322
Female, age 91, both hemispheres
818.7
2333
Male, age 80, both hemispheres
737.5
2452
Male, age 74, both hemispheres
674.6
2325
Male, age 76, both hemispheres
546.9
Spinal trigeminal nucleus, oral nTPM: 629.5
2164
Male, age 80, both hemispheres
715.9
1978
Male, age 76, both hemispheres
645.9
2737
Female, age 85, both hemispheres
526.7
Subcoeruleus area nTPM: 738.8
2369
Female, age 85, left hemisphere
1141.4
1958
Male, age 80, both hemispheres
744.2
2089
Male, age 76, left hemisphere
640.1
2451
Male, age 74, both hemispheres
593.9
2323
Female, age 91, left hemisphere
574.7
Superior olive nTPM: 749.3
2020
Male, age 76, both hemispheres
848.2
2364
Male, age 74, right hemisphere
760.3
2329
Male, age 80, right hemisphere
753.3
2561
Female, age 91, both hemispheres
729.2
1875
Female, age 85, both hemispheres
655.5
Ventral periolivary nuclei nTPM: 699.1
2023
Male, age 76, both hemispheres
938.1
2165
Male, age 80, both hemispheres
658.2
2794
Female, age 91, left hemisphere
657.2
2130
Female, age 85, both hemispheres
542.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 801.8
2359
Male, age 61, both hemispheres
963.7
2840
Female, age 85, both hemispheres
913.9
1959
Male, age 76, both hemispheres
767.2
2456
Female, age 91, both hemispheres
763.2
2161
Male, age 80, both hemispheres
724.2
2449
Male, age 74, both hemispheres
678.6
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
465.5
Pig sample
Sample description
nTPM
Pons nTPM: 465.5
Samples: 4
Max nTPM: 594.1
Min nTPM: 381.1
Sample A
Female
399.7
Sample B
Female
381.1
Sample C
Male
487.0
Sample D
Male
594.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
