PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Medulla oblongatai 		47.910
Mouse brain, Intensity
Ponsi 		37.740
RNA expressioni
HPA Brain:1154.6 nTPM
FANTOM5:962.6 Scaled Tags Per Million
Pig:642.1 nTPM
Mouse:180.4 nTPM
Allen mouse:9.2 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei , antibody HPA019123
Medulla oblongata mean intensity 47.910
intensityi
FRONT BACK
Nucleus of the solitary tract 14.383
Raphe magnus nucleus 14.165
Cochlear nucleus 17.852
Lateral paragigantocellular nucleus 4.668
Raphe pallidus nucleus 1.781
Facial nucleus 6.008
Hypoglossal nucleus 12.644
Ambiguus nucleus 23.808
External cuneate nucleus 12.220
Inferior olivary nucleus 47.910
Raphe obscures nucleus 12.133
Dorsal motor nucleus of vagus 12.265
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 26.994
Parabrachial nucleus 13.610
Principle sensory trigeminal nucleus 37.740
Locus coeruleus 13.816
Pontine nucleus 4.962
Vestibular nucleus 4.963
Pontine reticular nucleus, oral 17.902
Lateral lemniscus 12.219
Superior paraolivary nucleus 9.934

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 1154.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 875.1
2188 Female, age 91, both hemispheres 1011.9
2301 Female, age 85, both hemispheres 1008.9
2090 Male, age 80, both hemispheres 920.7
1984 Male, age 76, both hemispheres 559.0
Area postrema
nTPM: 997.0
2306 Male, age 80, both hemispheres 1171.7
2799 Male, age 61, both hemispheres 1121.8
2054 Male, age 76, both hemispheres 697.7
Dorsal cochlear nucleus
nTPM: 745.1
2187 Female, age 91, both hemispheres 847.1
2378 Male, age 80, both hemispheres 816.9
2802 Male, age 74, right hemisphere 776.9
2058 Male, age 76, both hemispheres 676.0
2370 Male, age 61, both hemispheres 608.4
Dorsal medullary reticular nucleus
nTPM: 735.1
2373 Male, age 61, both hemispheres 790.2
2040 Female, age 85, both hemispheres 744.9
2088 Male, age 76, both hemispheres 670.1
Dorsal motor vagal complex
nTPM: 670.9
2185 Male, age 76, both hemispheres 869.8
2797 Male, age 61, both hemispheres 730.2
2000 Male, age 74, unknown 703.4
2813 Female, age 72, unknown 701.6
2807 Female, age 85, both hemispheres 687.1
2643 Male, age 74, both hemispheres 611.5
2133 Female, age 91, both hemispheres 552.2
2844 Male, age 55, unknown 511.4
Dorsal tegmental nucleus
nTPM: 745.4
2083 Male, age 80, both hemispheres 831.4
2326 Male, age 74, both hemispheres 751.0
1936 Male, age 76, left hemisphere 732.0
2358 Male, age 61, both hemispheres 667.2
Dorsolateral tegmental area
nTPM: 762.1
2751 Female, age 85, both hemispheres 980.2
2337 Male, age 61, both hemispheres 911.0
2654 Male, age 80, both hemispheres 838.8
2360 Male, age 74, both hemispheres 541.9
2141 Male, age 76, both hemispheres 538.5
Gigantocellular reticular nuclei, medullary
nTPM: 793.1
2314 Male, age 61, both hemispheres 1118.8
1876 Female, age 85, both hemispheres 910.6
2387 Female, age 91, both hemispheres 852.5
2022 Male, age 76, right hemisphere 688.4
2310 Male, age 80, both hemispheres 675.6
2462 Male, age 74, both hemispheres 512.8
Gigantocellular reticular nuclei, pars
nTPM: 704.1
2706 Male, age 80, both hemispheres 777.3
2330 Male, age 80, both hemispheres 775.2
2336 Male, age 61, both hemispheres 764.5
2084 Female, age 85, both hemispheres 675.4
2168 Male, age 76, both hemispheres 528.1
Inferior olive
nTPM: 914.9
2178 Male, age 61, both hemispheres 1097.2
2628 Female, age 91, both hemispheres 936.4
2563 Male, age 74, both hemispheres 872.0
2085 Female, age 85, both hemispheres 855.7
2379 Male, age 80, both hemispheres 813.2
Kolliker-Fuse nucleus
nTPM: 877.2
2793 Female, age 91, left hemisphere 1020.8
2315 Male, age 76, right hemisphere 915.7
2163 Male, age 80, both hemispheres 695.0
Lateral lemniscal nuclei
nTPM: 675.5
2320 Female, age 91, left hemisphere 869.1
2746 Female, age 85, left hemisphere 683.5
2453 Male, age 74, right hemisphere 650.5
2169 Male, age 76, both hemispheres 622.4
2036 Male, age 80, both hemispheres 552.1
Lateral medullary reticular nucleus
nTPM: 929.6
2374 Male, age 61, both hemispheres 1045.5
2852 Male, age 80, both hemispheres 1042.5
2305 Male, age 74, both hemispheres 1005.3
2190 Female, age 85, both hemispheres 895.1
2804 Female, age 91, both hemispheres 839.0
2044 Male, age 76, both hemispheres 750.5
Lateral parabrachial nucleus
nTPM: 892.0
2792 Male, age 76, both hemispheres 1312.9
2013 Male, age 80, both hemispheres 889.6
2790 Male, age 61, both hemispheres 730.3
2139 Female, age 85, right hemisphere 635.3
Lateral vestibular nucleus
nTPM: 765.8
2311 Male, age 80, both hemispheres 844.1
2184 Male, age 76, both hemispheres 687.5
Locus coeruleus
nTPM: 520.2
2720 Male, age 74, both hemispheres 621.5
2788 Male, age 74, unknown 606.2
2162 Male, age 80, both hemispheres 555.1
2317 Female, age 72, unknown 544.7
2014 Male, age 55, unknown 476.3
2123 Female, age 91, both hemispheres 419.8
1980 Male, age 76, both hemispheres 417.7
Medial olivary nucleus
nTPM: 1154.6
1943 Male, age 61, both hemispheres 1386.4
1962 Male, age 76, both hemispheres 1180.7
2851 Male, age 80, both hemispheres 1076.0
2138 Female, age 91, both hemispheres 975.2
Medial parabrachial nucleus
nTPM: 789.4
2170 Female, age 91, both hemispheres 889.3
2854 Male, age 80, both hemispheres 873.8
2463 Female, age 85, right hemisphere 771.2
2786 Male, age 76, both hemispheres 737.4
2156 Male, age 61, both hemispheres 675.5
Medial periolivary nuclei
nTPM: 708.3
2081 Male, age 80, both hemispheres 840.4
2791 Male, age 74, right hemisphere 822.9
2458 Female, age 91, both hemispheres 810.0
2063 Male, age 76, both hemispheres 574.0
2171 Female, age 85, both hemispheres 494.3
Medial vestibular nucleus
nTPM: 752.3
2801 Male, age 74, both hemispheres 926.6
2803 Female, age 91, both hemispheres 921.2
2093 Male, age 80, both hemispheres 778.5
2624 Male, age 61, both hemispheres 726.3
2743 Female, age 85, both hemispheres 612.4
2134 Male, age 76, both hemispheres 548.7
Motor facial nucleus
nTPM: 741.4
2697 Female, age 85, both hemispheres 936.0
2365 Male, age 74, right hemisphere 817.1
2795 Female, age 91, both hemispheres 779.5
2126 Male, age 61, both hemispheres 770.9
2327 Male, age 80, both hemispheres 632.2
2062 Male, age 76, both hemispheres 512.4
Motor hypoglossal nucleus
nTPM: 705.1
2182 Male, age 80, both hemispheres 785.9
2132 Female, age 85, both hemispheres 772.1
2125 Female, age 91, both hemispheres 771.5
2461 Male, age 61, both hemispheres 672.4
2277 Male, age 76, both hemispheres 523.3
Motor trigeminal nucleus
nTPM: 703.7
2321 Female, age 91, both hemispheres 790.8
2309 Male, age 76, both hemispheres 744.9
2560 Male, age 74, both hemispheres 703.7
2079 Male, age 80, both hemispheres 641.1
2335 Male, age 61, both hemispheres 637.8
Nuclei of the trapezoid body
nTPM: 595.2
2166 Male, age 80, both hemispheres 768.2
2368 Female, age 91, both hemispheres 709.7
1983 Male, age 76, both hemispheres 576.1
2159 Male, age 61, both hemispheres 502.2
2735 Female, age 85, both hemispheres 419.7
Nucleus ambiguus
nTPM: 815.9
2071 Male, age 76, both hemispheres 1190.8
2096 Female, age 85, both hemispheres 441.0
Nucleus cuneatus
nTPM: 846.4
2808 Female, age 85, both hemispheres 1117.1
2380 Male, age 80, both hemispheres 1095.8
2381 Male, age 80, both hemispheres 1015.1
2376 Male, age 61, both hemispheres 804.5
2100 Male, age 76, both hemispheres 803.6
2805 Female, age 91, both hemispheres 777.2
2564 Male, age 74, both hemispheres 737.5
2562 Male, age 61, both hemispheres 635.3
2131 Male, age 76, both hemispheres 631.2
Nucleus gracilis
nTPM: 1050.1
2382 Male, age 80, both hemispheres 1284.7
2627 Male, age 74, both hemispheres 961.7
2299 Female, age 85, both hemispheres 903.8
Nucleus raphe magnus
nTPM: 610.9
2459 Female, age 91, both hemispheres 765.1
2328 Male, age 80, both hemispheres 762.2
2051 Male, age 76, both hemispheres 694.9
2455 Male, age 74, both hemispheres 679.3
2160 Male, age 61, both hemispheres 389.5
2172 Female, age 85, both hemispheres 374.7
Nucleus raphe obscurus
nTPM: 1120.4
2845 Female, age 85, midline 1226.1
2142 Male, age 76, midline 1173.8
2800 Male, age 61, midline 961.2
Nucleus raphe pallidus
nTPM: 1058.2
2145 Male, age 76, midline 1231.9
1924 Male, age 61, midline 1131.2
2183 Male, age 80, midline 811.4
Nucleus tractus solitarii
nTPM: 543.7
2144 Female, age 91, right hemisphere 695.0
2656 Male, age 76, both hemispheres 544.6
2191 Female, age 85, both hemispheres 489.0
2307 Male, age 80, both hemispheres 446.3
Paramedian reticular nucleus
nTPM: 762.0
2052 Male, age 76, both hemispheres 1032.1
2050 Female, age 85, both hemispheres 720.6
2057 Male, age 80, both hemispheres 713.2
2313 Male, age 61, both hemispheres 582.0
Parvicellular reticular nuclei
nTPM: 762.7
2095 Male, age 76, both hemispheres 869.0
2119 Male, age 80, both hemispheres 829.8
2558 Male, age 74, both hemispheres 589.2
Parvicellular reticular nuclei, medullary
nTPM: 673.2
2189 Female, age 91, both hemispheres 713.0
2181 Male, age 80, left hemisphere 659.9
2091 Female, age 85, both hemispheres 646.9
Pedunculopontine tegmental nucleus
nTPM: 797.2
2338 Male, age 61, both hemispheres 941.8
2334 Male, age 80, both hemispheres 787.8
1921 Female, age 85, both hemispheres 662.2
Peritrigeminal nucleus
nTPM: 826.1
2136 Male, age 76, both hemispheres 884.3
2179 Male, age 61, both hemispheres 820.4
2067 Female, age 85, both hemispheres 773.6
Pontine nuclei
nTPM: 710.8
2454 Male, age 74, left hemisphere 975.9
2319 Female, age 91, both hemispheres 934.9
2109 Female, age 72, unknown 804.1
1863 Male, age 55, unknown 724.3
2115 Male, age 80, left hemisphere 711.2
1968 Male, age 76, left hemisphere 635.5
2787 Female, age 85, both hemispheres 452.6
2727 Male, age 61, right hemisphere 448.2
Pontine raphe nucleus
nTPM: 593.7
2853 Male, age 76, midline 624.2
2122 Female, age 85, midline 563.2
Posteroventral cochlear nucleus
nTPM: 882.0
2341 Male, age 80, both hemispheres 1126.8
2135 Female, age 91, both hemispheres 1125.8
2070 Male, age 76, both hemispheres 773.8
2371 Male, age 61, both hemispheres 759.0
2752 Female, age 85, both hemispheres 624.4
Prepositus hypoglossal nucleus
nTPM: 770.2
2855 Female, age 85, right hemisphere 899.0
2086 Male, age 80, both hemispheres 641.4
Principal sensory trigeminal nucleus
nTPM: 669.2
2367 Female, age 91, left hemisphere 967.8
2324 Male, age 76, both hemispheres 745.9
2008 Male, age 80, left hemisphere 569.4
2158 Male, age 61, both hemispheres 393.9
Reticular pontine nucleus, caudal
nTPM: 774.8
2457 Female, age 91, both hemispheres 927.3
2559 Male, age 74, both hemispheres 849.2
2092 Male, age 76, both hemispheres 769.5
2332 Male, age 80, right hemisphere 553.1
Reticular pontine nucleus, oral
nTPM: 873.4
2366 Female, age 91, both hemispheres 1033.3
1939 Male, age 80, both hemispheres 912.5
2361 Male, age 74, both hemispheres 843.8
2167 Male, age 76, both hemispheres 811.2
2012 Female, age 85, both hemispheres 766.4
Reticulotegmental nucleus
nTPM: 694.4
2322 Female, age 91, both hemispheres 818.7
2333 Male, age 80, both hemispheres 737.5
2452 Male, age 74, both hemispheres 674.6
2325 Male, age 76, both hemispheres 546.9
Spinal trigeminal nucleus, caudal
nTPM: 786.0
2312 Male, age 61, both hemispheres 970.3
2308 Male, age 80, both hemispheres 834.1
2642 Male, age 74, both hemispheres 741.0
2390 Female, age 91, both hemispheres 712.6
2447 Male, age 76, both hemispheres 671.9
Spinal trigeminal nucleus, interpolar
nTPM: 665.6
2389 Female, age 91, both hemispheres 758.8
2386 Female, age 85, both hemispheres 700.0
2033 Male, age 80, both hemispheres 669.9
2625 Male, age 61, both hemispheres 601.6
2066 Male, age 76, right hemisphere 597.9
Spinal trigeminal nucleus, oral
nTPM: 629.5
2164 Male, age 80, both hemispheres 715.9
1978 Male, age 76, both hemispheres 645.9
2737 Female, age 85, both hemispheres 526.7
Spinal vestibular nucleus
nTPM: 765.8
2806 Female, age 85, both hemispheres 928.4
2748 Male, age 76, both hemispheres 854.3
2186 Female, age 91, both hemispheres 750.6
2384 Male, age 74, both hemispheres 736.9
2796 Male, age 61, both hemispheres 675.5
2780 Male, age 80, both hemispheres 648.9
Subcoeruleus area
nTPM: 738.8
2369 Female, age 85, left hemisphere 1141.4
1958 Male, age 80, both hemispheres 744.2
2089 Male, age 76, left hemisphere 640.1
2451 Male, age 74, both hemispheres 593.9
2323 Female, age 91, left hemisphere 574.7
Superior olive
nTPM: 749.3
2020 Male, age 76, both hemispheres 848.2
2364 Male, age 74, right hemisphere 760.3
2329 Male, age 80, right hemisphere 753.3
2561 Female, age 91, both hemispheres 729.2
1875 Female, age 85, both hemispheres 655.5
Superior vestibular nucleus
nTPM: 779.2
2015 Male, age 80, both hemispheres 793.0
2383 Male, age 74, both hemispheres 787.3
2061 Male, age 76, both hemispheres 757.3
Ventral medullary reticular nucleus
nTPM: 808.9
2372 Male, age 61, both hemispheres 893.3
2060 Male, age 76, both hemispheres 724.5
Ventral periolivary nuclei
nTPM: 699.1
2023 Male, age 76, both hemispheres 938.1
2165 Male, age 80, both hemispheres 658.2
2794 Female, age 91, left hemisphere 657.2
2130 Female, age 85, both hemispheres 542.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 822.3
2118 Male, age 80, both hemispheres 957.5
2180 Male, age 61, both hemispheres 904.1
1986 Male, age 76, both hemispheres 806.6
2302 Female, age 91, both hemispheres 745.6
2741 Female, age 85, both hemispheres 697.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 801.8
2359 Male, age 61, both hemispheres 963.7
2840 Female, age 85, both hemispheres 913.9
1959 Male, age 76, both hemispheres 767.2
2456 Female, age 91, both hemispheres 763.2
2161 Male, age 80, both hemispheres 724.2
2449 Male, age 74, both hemispheres 678.6

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 962.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 962.6
FF:10182-103D2 60 years, female 986.1
FF:10165-103B3 76 years, female 939.1
Medulla oblongata
Scaled Tags Per Million: 776.7
FF:10038-101F2 18-64 years, mixed 1073.8
FF:10155-103A2 76 years, female 833.3
FF:10174-103C3 60 years, female 423.1
Pons
Scaled Tags Per Million: 877.4
FF:10033-101E6 18-54 years, mixed 877.4

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 642.1
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 642.1
Samples: 4

Max nTPM: 756.4
Min nTPM: 531.3
Sample A Female 706.4
Sample B Female 531.3
Sample C Male 574.1
Sample D Male 756.4
Pons
nTPM: 465.5
Samples: 4

Max nTPM: 594.1
Min nTPM: 381.1
Sample A Female 399.7
Sample B Female 381.1
Sample C Male 487.0
Sample D Male 594.1

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 180.4
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 180.4
Samples: 4

Max nTPM: 196.5
Min nTPM: 167.1
Sample A Male 179.6
Sample B Male 178.4
Sample C Female 167.1
Sample D Female 196.5

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 9.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 9.2
1151 Antisense, RP_Baylor_102604, Mouse strain C57BL/6J (56 days, male) 12.7
68797858 Antisense, RP_050215_01_C08, Mouse strain C57BL/6J (56 days, male) 12.3
73635471 Antisense, RP_051130_02_F07, Mouse strain C57BL/6J (56 days, male) 2.5
Pons
Expression energy: 9.2
1151 Antisense, RP_Baylor_102604, Mouse strain C57BL/6J (56 days, male) 13.2
68797858 Antisense, RP_050215_01_C08, Mouse strain C57BL/6J (56 days, male) 12.1
73635471 Antisense, RP_051130_02_F07, Mouse strain C57BL/6J (56 days, male) 2.3

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