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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:357.4 nTPM
HPA Brain:435.3 nTPM
GTEx:357.4 nTPM
FANTOM5:780.3 Scaled Tags Per Million
Pig:347.2 nTPM
Mouse:494.8 nTPM
Allen mouse:22.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

435.3
Sample id Sample description nTPM
Amygdala
nTPM: 433.1
2814 Male, age 76, right hemisphere 524.3
2695 Female, age 67, right hemisphere 491.8
2517 Female, age 94, left hemisphere 411.0
2514 Male, age 75, right hemisphere 399.8
1987 Female, age 91, left hemisphere 338.5
Basal amygdala
nTPM: 416.3
2685 Female, age 94, left hemisphere 462.7
2110 Male, age 80, left hemisphere 448.3
2827 Female, age 67, right hemisphere 438.5
1955 Male, age 76, both hemispheres 414.5
2609 Male, age 75, right hemisphere 385.3
2243 Female, age 91, right hemisphere 348.6
Central amygdala
nTPM: 431.4
2826 Female, age 94, left hemisphere 591.8
1905 Male, age 76, both hemispheres 459.0
2515 Male, age 75, right hemisphere 378.3
2239 Male, age 80, left hemisphere 376.0
2701 Female, age 91, right hemisphere 351.8
Corticomedial amygdala
nTPM: 377.3
2829 Male, age 80, left hemisphere 492.6
2240 Male, age 76, both hemispheres 389.3
2429 Female, age 94, left hemisphere 386.6
2428 Male, age 75, right hemisphere 356.8
2535 Female, age 67, right hemisphere 349.2
2242 Female, age 91, right hemisphere 289.5
Lateral amygdala
nTPM: 435.3
2534 Female, age 94, left hemisphere 507.4
2830 Female, age 67, right hemisphere 507.4
1883 Male, age 76, both hemispheres 488.2
2516 Male, age 75, right hemisphere 449.4
2256 Male, age 80, left hemisphere 360.8
2255 Female, age 91, right hemisphere 298.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

357.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 357.4
Samples: 152

Max nTPM: 770.7
Min nTPM: 165.1
Std nTPM: 110.2
Median nTPM: 335.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 770.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 689.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 665.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 641.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 580.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 579.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 577.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 561.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 560.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 551.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 545.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 538.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 536.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 510.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 507.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 505.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 495.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 493.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 490.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 479.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 478.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 475.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 469.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 467.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 465.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 463.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 459.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 459.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 456.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 455.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 448.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 444.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 442.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 439.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 434.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 428.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 423.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 421.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 415.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 413.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 413.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 410.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 408.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 405.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 402.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 399.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 399.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 397.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 395.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 392.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 382.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 377.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 376.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 375.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 374.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 371.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 366.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 366.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 362.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 359.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 359.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 358.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 357.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 356.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 356.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 356.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 355.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 354.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 349.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 348.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 345.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 345.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 343.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 340.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 337.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 335.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 335.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 334.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 333.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 332.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 331.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 330.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 330.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 328.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 327.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 327.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 324.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 322.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 321.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 320.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 319.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 317.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 317.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 315.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 313.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 312.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 311.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 306.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 304.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 303.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 302.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 297.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 297.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 295.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 293.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 292.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 290.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 285.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 284.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 283.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 277.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 277.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 273.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 272.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 272.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 271.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 271.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 268.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 267.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 266.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 264.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 263.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 262.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 261.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 259.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 257.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 256.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 256.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 255.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 249.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 246.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 243.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 243.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 241.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 240.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 238.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 236.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 234.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 234.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 233.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 222.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 219.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 214.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 210.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 208.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 203.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 198.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 190.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 189.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 186.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 186.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 165.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

780.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 780.3
FF:10151-102I7 76 years, female 780.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

347.2
Pig sample Sample description nTPM
Amygdala
nTPM: 347.2
Samples: 4

Max nTPM: 461.4
Min nTPM: 257.6
Sample A Female 461.4
Sample B Female 327.4
Sample C Male 257.6
Sample D Male 342.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

494.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 494.8
Samples: 4

Max nTPM: 527.2
Min nTPM: 474.6
Sample A Male 477.0
Sample B Male 500.2
Sample C Female 527.2
Sample D Female 474.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.2
68162204 Antisense, RP_041122_01_G02, Mouse strain C57BL/6J (56 days, male) 24.2
70805906 Antisense, RP_050725_02_E03, Mouse strain C57BL/6J (56 days, male) 20.2

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