We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RTN4
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • RTN4
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:505.0 nTPM
HPA Brain:582.2 nTPM
GTEx:505.0 nTPM
FANTOM5:630.9 Scaled Tags Per Million
Pig:519.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

582.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 546.4
1981 Female, age 72, midline 608.4
2565 Male, age 75, midline 552.8
2194 Female, age 79, both hemispheres 529.1
2048 Male, age 55, midline 521.2
2816 Male, age 47, midline 520.6
Cervical spinal cord, dorsal horn
nTPM: 570.0
2296 Male, age 66, both hemispheres 822.2
2173 Female, age 72, unknown 774.5
2069 Male, age 47, both hemispheres 541.3
1877 Male, age 55, unknown 483.5
2297 Male, age 75, both hemispheres 424.3
2721 Male, age 90, both hemispheres 374.4
Cervical spinal cord, ventral horn
nTPM: 582.2
2480 Male, age 75, both hemispheres 651.4
2068 Male, age 55, unknown 612.4
2809 Male, age 90, both hemispheres 596.2
2098 Female, age 72, unknown 579.6
2820 Female, age 79, both hemispheres 558.4
2295 Male, age 66, both hemispheres 495.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

505.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 505.0
Samples: 159

Max nTPM: 937.1
Min nTPM: 255.3
Std nTPM: 126.9
Median nTPM: 497.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 937.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 856.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 815.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 801.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 763.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 757.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 749.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 744.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 722.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 714.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 693.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 684.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 678.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 674.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 670.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 668.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 668.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 662.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 655.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 654.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 654.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 651.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 642.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 638.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 637.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 633.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 632.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 631.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 629.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 628.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 626.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 618.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 618.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 618.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 606.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 606.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 599.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 596.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 591.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 588.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 587.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 587.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 584.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 584.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 583.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 577.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 571.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 564.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 563.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 563.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 562.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 561.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 559.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 559.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 556.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 555.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 551.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 551.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 550.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 550.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 546.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 538.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 538.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 534.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 527.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 526.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 525.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 521.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 518.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 512.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 509.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 509.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 508.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 508.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 507.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 505.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 502.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 501.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 498.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 497.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 495.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 489.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 484.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 474.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 472.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 468.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 465.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 465.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 461.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 456.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 453.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 451.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 450.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 446.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 444.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 444.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 440.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 437.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 434.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 433.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 433.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 431.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 429.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 429.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 429.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 428.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 428.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 427.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 426.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 421.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 420.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 417.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 416.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 416.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 416.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 413.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 413.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 411.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 408.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 408.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 407.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 405.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 403.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 403.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 396.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 395.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 395.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 394.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 391.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 389.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 388.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 388.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 387.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 386.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 383.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 383.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 383.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 382.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 376.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 375.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 367.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 364.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 363.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 362.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 359.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 357.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 352.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 348.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 324.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 324.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 312.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 311.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 311.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 307.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 303.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 302.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 287.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 268.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 255.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

630.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 630.9
FF:10181-103D1 60 years, female 793.6
FF:10159-103A6 76 years, female 468.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

519.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 414.3
Samples: 4

Max nTPM: 508.1
Min nTPM: 286.9
Sample A Female 508.1
Sample B Female 402.1
Sample C Male 286.9
Sample D Male 460.0
Ventral spinal cord
nTPM: 519.2
Samples: 4

Max nTPM: 615.0
Min nTPM: 465.5
Sample A Female 615.0
Sample B Female 519.4
Sample C Male 476.8
Sample D Male 465.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org