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RPL22
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:306.8 nTPM
GTEx:306.8 nTPM
FANTOM5:326.2 Scaled Tags Per Million
Pig:134.0 nTPM
Mouse:456.4 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

306.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 306.8
Samples: 105

Max nTPM: 488.4
Min nTPM: 194.2
Std nTPM: 45.2
Median nTPM:
35_1 74 years, female 488.4
237_1 82 years, male 436.8
379_1 60 years, male 393.2
315_1 62 years, female 377.6
153_1 70 years, female 373.1
375_1 74 years, female 369.9
491_1 89 years, female 362.5
246_1 77 years, male 361.7
384_1 83 years, male 359.6
162_1 79 years, female 359.3
229_1 69 years, female 354.7
447_1 81 years, male 354.6
389_1 86 years, female 354.1
415_1 77 years, female 354.1
495_1 57 years, female 353.4
322_1 76 years, male 350.0
6_1 73 years, female 349.7
396_1 62 years, male 348.6
307_1 66 years, female 346.6
142_1 61 years, female 345.2
218_1 71 years, female 344.1
139_1 64 years, female 343.3
414_1 84 years, female 342.4
466_1 57 years, female 340.7
17_1 71 years, male 338.1
490_1 67 years, female 336.7
81_1 67 years, male 335.6
126_1 63 years, male 334.0
4_1 88 years, female 333.6
405_1 91 years, male 333.6
320_1 89 years, female 328.4
377_1 82 years, female 327.5
189_1 76 years, male 326.8
311_1 78 years, male 325.4
316_1 62 years, male 325.3
137_1 83 years, male 324.1
217_1 76 years, male 322.5
265_1 87 years, male 322.1
120_1 70 years, female 321.6
42_1 85 years, male 321.0
313_1 79 years, female 320.7
452_1 88 years, female 318.9
518_1 75 years, female 318.7
526_1 61 years, male 314.0
413_1 59 years, female 312.5
308_1 70 years, female 311.8
347_1 72 years, male 311.2
321_1 62 years, female 310.7
32_1 67 years, male 309.2
2_1 77 years, female 307.7
145_1 84 years, male 306.8
99_1 64 years, male 305.0
43_1 64 years, female 304.4
319_1 81 years, male 304.4
119_1 70 years, female 303.9
117_1 61 years, male 302.6
288_1 66 years, female 302.1
376_1 75 years, female 300.2
354_1 81 years, female 299.3
499_1 55 years, female 298.3
348_1 84 years, male 298.0
173_1 67 years, male 297.9
254_1 77 years, female 297.4
41_1 94 years, female 297.1
501_1 88 years, male 295.9
18_1 88 years, male 294.8
266_1 85 years, male 294.4
386_1 76 years, male 293.7
394_1 75 years, female 292.8
355_1 70 years, female 292.7
109_1 81 years, female 291.1
324_1 76 years, male 289.6
404_1 82 years, female 289.4
468_1 89 years, male 288.5
480_1 63 years, male 287.4
317_1 60 years, male 282.7
149_1 88 years, male 279.3
286_1 68 years, female 278.8
89_1 63 years, male 278.6
349_1 83 years, male 277.7
115_1 83 years, male 277.0
425_1 59 years, female 272.7
243_1 75 years, male 272.2
314_1 67 years, male 271.6
335_1 73 years, female 270.3
318_1 68 years, male 267.2
251_1 78 years, male 265.2
352_1 62 years, male 260.2
172_1 72 years, female 259.9
291_1 76 years, male 258.9
295_1 61 years, female 258.5
517_1 88 years, male 257.6
177_1 74 years, male 251.2
351_1 91 years, male 248.4
406_1 79 years, male 248.3
264_1 73 years, female 247.2
350_1 84 years, female 244.5
9_1 66 years, female 242.9
503_1 68 years, male 235.4
163_1 78 years, male 232.8
353_1 82 years, female 232.7
292_1 71 years, male 231.3
356_1 87 years, female 223.4
506_1 65 years, male 213.5
293_1 68 years, female 194.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

326.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 326.2
FF:10030-101E3 24-65 years, mixed 326.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.0
Pig sample Sample description nTPM
Retina
nTPM: 134.0
Samples: 4

Max nTPM: 156.3
Min nTPM: 120.5
Sample A Female 134.9
Sample B Female 124.4
Sample C Male 156.3
Sample D Male 120.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

456.4
Mouse sample Sample description nTPM
Retina
nTPM: 456.4
Samples: 4

Max nTPM: 544.0
Min nTPM: 369.7
Sample A Male 458.5
Sample B Male 369.7
Sample C Female 544.0
Sample D Female 453.5

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