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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:480.5 nTPM
HPA Brain:140.0 nTPM
GTEx:480.5 nTPM
FANTOM5:320.5 Scaled Tags Per Million
Pig:438.7 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 107.9
2565 Male, age 75, midline 135.6
1981 Female, age 72, midline 120.3
2048 Male, age 55, midline 115.1
2816 Male, age 47, midline 88.1
2194 Female, age 79, both hemispheres 80.6
Cervical spinal cord, dorsal horn
nTPM: 120.3
2069 Male, age 47, both hemispheres 157.8
2173 Female, age 72, unknown 152.0
2296 Male, age 66, both hemispheres 127.3
1877 Male, age 55, unknown 121.5
2721 Male, age 90, both hemispheres 83.1
2297 Male, age 75, both hemispheres 80.0
Cervical spinal cord, ventral horn
nTPM: 140.0
2480 Male, age 75, both hemispheres 193.8
2809 Male, age 90, both hemispheres 173.2
2098 Female, age 72, unknown 154.3
2295 Male, age 66, both hemispheres 127.7
2068 Male, age 55, unknown 112.6
2820 Female, age 79, both hemispheres 78.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

480.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 480.5
Samples: 159

Max nTPM: 890.2
Min nTPM: 212.6
Std nTPM: 132.9
Median nTPM: 463.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 890.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 856.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 841.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 808.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 771.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 762.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 730.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 725.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 719.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 712.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 699.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 696.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 690.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 685.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 680.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 676.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 667.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 662.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 646.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 646.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 644.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 644.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 619.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 618.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 618.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 610.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 609.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 608.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 607.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 606.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 603.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 599.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 596.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 595.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 593.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 580.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 578.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 574.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 573.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 569.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 555.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 552.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 551.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 549.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 547.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 533.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 532.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 529.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 525.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 519.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 517.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 517.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 514.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 512.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 512.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 502.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 500.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 496.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 495.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 493.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 493.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 491.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 489.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 489.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 488.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 485.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 483.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 481.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 478.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 477.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 476.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 476.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 475.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 474.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 470.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 470.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 468.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 468.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 467.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 463.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 459.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 459.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 454.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 453.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 452.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 444.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 444.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 442.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 441.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 440.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 439.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 437.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 436.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 434.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 431.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 430.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 429.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 428.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 426.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 425.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 423.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 423.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 422.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 422.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 419.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 418.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 413.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 412.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 412.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 407.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 407.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 407.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 407.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 401.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 397.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 394.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 389.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 386.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 385.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 382.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 380.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 373.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 372.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 367.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 366.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 365.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 363.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 363.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 360.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 360.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 360.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 359.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 359.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 358.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 355.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 354.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 354.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 354.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 353.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 346.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 345.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 337.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 331.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 330.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 325.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 324.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 321.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 321.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 320.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 313.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 291.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 287.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 286.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 286.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 258.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 236.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 227.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 216.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 212.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

320.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 320.5
FF:10159-103A6 76 years, female 333.3
FF:10181-103D1 60 years, female 307.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

438.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 438.8
Samples: 4

Max nTPM: 622.9
Min nTPM: 305.9
Sample A Female 331.6
Sample B Female 494.7
Sample C Male 622.9
Sample D Male 305.9
Ventral spinal cord
nTPM: 380.4
Samples: 4

Max nTPM: 478.2
Min nTPM: 322.8
Sample A Female 357.9
Sample B Female 362.8
Sample C Male 478.2
Sample D Male 322.8

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